Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq19881 129 4e-25 seq10545 125 5e-24 seq7604 116 2e-21 seq8631 104 2e-17 >seq19881 Length=10700766 Score = 129 bits (142), Expect = 4e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | ||| || || || | |||| ||||||||| ||||| ||||| || Sbjct 10194029 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 10194088 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || || |||||||| | |||||||| | || Sbjct 10194089 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 10194148 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || || ||||| | || || ||| || || || || | ||| ||| ||| | Sbjct 10194149 ATGCCTTCTTTGTCCTGGATCTTGGCTTTCAC--ATTCTCAATGGTGTCACTGGGCTCCA 10194206 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| |||||||||||||| Sbjct 10194207 CCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194255 Score = 129 bits (142), Expect = 4e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | ||| || || || | |||| ||||||||| ||||| ||||| || Sbjct 10194257 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 10194316 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || || |||||||| | |||||||| | || Sbjct 10194317 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 10194376 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || || ||||| | || || ||| || || || || | ||| ||| ||| | Sbjct 10194377 ATGCCTTCTTTGTCCTGGATCTTGGCTTTCAC--ATTCTCAATGGTGTCACTGGGCTCCA 10194434 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| |||||||||||||| Sbjct 10194435 CCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194483 Score = 129 bits (142), Expect = 4e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | ||| || || || | |||| ||||||||| ||||| ||||| || Sbjct 10194485 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 10194544 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || || |||||||| | |||||||| | || Sbjct 10194545 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 10194604 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || || ||||| | || || ||| || || || || | ||| ||| ||| | Sbjct 10194605 ATGCCTTCTTTGTCCTGGATCTTGGCTTTCAC--ATTCTCAATGGTGTCACTGGGCTCCA 10194662 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| |||||||||||||| Sbjct 10194663 CCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194711 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | ||| || || || | |||| ||||||||| ||||| ||||| || Sbjct 10193460 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 10193519 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || || |||||||| | |||||||| | || Sbjct 10193520 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 10193579 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || ||||| | || || ||| ||| | || | ||| ||| || || Sbjct 10193580 ATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGTTCAACC 10193639 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||| |||||||| || || |||||||| ||||||||||||||| Sbjct 10193640 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 10193687 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | ||| || || || | |||| ||||||||| ||||| ||||| || Sbjct 10194713 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 10194772 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || || |||||||| | |||||||| | || Sbjct 10194773 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 10194832 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || ||||| | || || ||| ||| | || | ||| ||| || || Sbjct 10194833 ATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGTTCAACC 10194892 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||| |||||||| || || |||||||| ||||||||||||||| Sbjct 10194893 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 10194940 >seq10545 Length=227 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | ||| || || || | |||| ||||||||| ||||| ||||| || Sbjct 227 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 168 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || || |||||||| | |||||||| | || Sbjct 167 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 108 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || ||||| | || || ||| ||| | || | ||| ||| || || Sbjct 107 ATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGTTCAACC 48 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || || |||||||| |||||||||||||| Sbjct 47 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1 >seq7604 Length=1415154 Score = 116 bits (128), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||| | ||| || ||||| ||||| ||||| || ||| ||||| | || Sbjct 1124652 CAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTC 1124711 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || ||||||| | ||||| ||| | || | || || ||||| Sbjct 1124712 TTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTC 1124771 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | ||||| ||||| || || || | ||| ||| ||| || || | ||| ||| Sbjct 1124772 CTGGATTTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATG 1124829 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || | ||| || |||||||||||||| Sbjct 1124830 GTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1124864 Score = 116 bits (128), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||| | ||| || ||||| ||||| ||||| || ||| ||||| | || Sbjct 1124880 CAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTC 1124939 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || ||||||| | ||||| ||| | || | || || ||||| Sbjct 1124940 TTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTC 1124999 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | ||||| ||||| || || || | ||| ||| ||| || || | ||| ||| Sbjct 1125000 CTGGATTTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATG 1125057 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || | ||| || |||||||||||||| Sbjct 1125058 GTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125092 Score = 116 bits (128), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||| | ||| || ||||| ||||| ||||| || ||| ||||| | || Sbjct 1125108 CAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTC 1125167 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || ||||||| | ||||| ||| | || | || || ||||| Sbjct 1125168 TTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTC 1125227 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | ||||| ||||| || || || | ||| ||| ||| || || | ||| ||| Sbjct 1125228 CTGGATTTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATG 1125285 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || | ||| || |||||||||||||| Sbjct 1125286 GTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125320 Score = 116 bits (128), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||| | ||| || ||||| ||||| ||||| || ||| ||||| | || Sbjct 1125336 CAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTC 1125395 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || ||||||| | ||||| ||| | || | || || ||||| Sbjct 1125396 TTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTC 1125455 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | ||||| ||||| || || || | ||| ||| ||| || || | ||| ||| Sbjct 1125456 CTGGATTTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATG 1125513 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || | ||| || |||||||||||||| Sbjct 1125514 GTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125548 Score = 116 bits (128), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||| | ||| || ||||| ||||| ||||| || ||| ||||| | || Sbjct 1125564 CAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTC 1125623 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || ||||||| | ||||| ||| | || | || || ||||| Sbjct 1125624 TTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTC 1125683 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | ||||| ||||| || || || | ||| ||| ||| || || | ||| ||| Sbjct 1125684 CTGGATTTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATG 1125741 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || | ||| || |||||||||||||| Sbjct 1125742 GTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125776 Score = 116 bits (128), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||| | ||| || ||||| ||||| ||||| || ||| ||||| | || Sbjct 1125792 CAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTC 1125851 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || ||||||| | ||||| ||| | || | || || ||||| Sbjct 1125852 TTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTC 1125911 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | ||||| ||||| || || || | ||| ||| ||| || || | ||| ||| Sbjct 1125912 CTGGATTTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATG 1125969 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || | ||| || |||||||||||||| Sbjct 1125970 GTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1126004 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| || ||||| ||||| ||||| || ||| ||||| | || Sbjct 1124425 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCT 1124484 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || ||||||| | ||||| ||| | || | || || ||||| Sbjct 1124485 TCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCC 1124544 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| ||||| || || || | ||| ||| ||| || || | ||| |||| Sbjct 1124545 TGGATTTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGG 1124602 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || | ||| || |||||||||||||| Sbjct 1124603 TCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1124636 >seq8631 Length=204 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || ||||| ||||| ||||| || ||| ||||| | || ||||| ||||| || || ||| Sbjct 191 TCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAG 132 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| | ||||| ||| | || | || || ||||| | ||||| ||||| || Sbjct 131 ATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGAC--AT 74 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || | ||| ||| ||| || || | ||| |||||||| || || | ||| || | Sbjct 73 TCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCA 14 Query 34965 CAAAGATCTGCAT 34977 ||||||||||||| Sbjct 13 CAAAGATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325613793440576