Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq7604 141 7e-29 seq8631 127 2e-24 >seq7604 Length=1415154 Score = 141 bits (156), Expect = 7e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| |||| || || ||||||||||| || ||||| || || | | |||||| Sbjct 1125790 CGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCG 1125849 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || |||||| | ||||| || |||||||| || ||||| || |||||| Sbjct 1125850 TCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTG 1125909 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| |||||| | || | |||||| | |||||||| || || || Sbjct 1125910 TCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATG 1125969 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| || |||||||| ||||| ||||||||||| Sbjct 1125970 GTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCATTTT 1126007 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||| || || ||||||||||| || ||||| || || | | |||||| Sbjct 1124422 CGTAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCG 1124481 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || |||||| | ||||| || |||||||| || ||||| || |||||| Sbjct 1124482 TCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTG 1124541 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| |||||| | || | |||||| | |||||||| || || || Sbjct 1124542 TCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATG 1124601 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || |||||||| ||||| |||||||| Sbjct 1124602 GTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1124636 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| |||| || || ||||||||||| || ||||| || || | | |||||| Sbjct 1124650 CGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCG 1124709 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || |||||| | ||||| || |||||||| || ||||| || |||||| Sbjct 1124710 TCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTG 1124769 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| |||||| | || | |||||| | |||||||| || || || Sbjct 1124770 TCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATG 1124829 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || |||||||| ||||| |||||||| Sbjct 1124830 GTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1124864 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| |||| || || ||||||||||| || ||||| || || | | |||||| Sbjct 1124878 CGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCG 1124937 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || |||||| | ||||| || |||||||| || ||||| || |||||| Sbjct 1124938 TCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTG 1124997 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| |||||| | || | |||||| | |||||||| || || || Sbjct 1124998 TCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATG 1125057 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || |||||||| ||||| |||||||| Sbjct 1125058 GTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125092 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| |||| || || ||||||||||| || ||||| || || | | |||||| Sbjct 1125106 CGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCG 1125165 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || |||||| | ||||| || |||||||| || ||||| || |||||| Sbjct 1125166 TCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTG 1125225 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| |||||| | || | |||||| | |||||||| || || || Sbjct 1125226 TCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATG 1125285 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || |||||||| ||||| |||||||| Sbjct 1125286 GTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125320 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| |||| || || ||||||||||| || ||||| || || | | |||||| Sbjct 1125334 CGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCG 1125393 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || |||||| | ||||| || |||||||| || ||||| || |||||| Sbjct 1125394 TCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTG 1125453 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| |||||| | || | |||||| | |||||||| || || || Sbjct 1125454 TCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATG 1125513 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || |||||||| ||||| |||||||| Sbjct 1125514 GTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125548 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| |||| || || ||||||||||| || ||||| || || | | |||||| Sbjct 1125562 CGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCG 1125621 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || |||||| | ||||| || |||||||| || ||||| || |||||| Sbjct 1125622 TCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTG 1125681 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| |||||| | || | |||||| | |||||||| || || || Sbjct 1125682 TCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATG 1125741 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || |||||||| ||||| |||||||| Sbjct 1125742 GTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125776 >seq8631 Length=204 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || ||||||||||| || ||||| || || | | |||||| || || || || Sbjct 203 TGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGC 144 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| | ||||| || |||||||| || ||||| || |||||||| || | ||| Sbjct 143 TTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTG 84 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 |||||| | || | |||||| | |||||||| || || || || ||||| || Sbjct 83 GCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTC 24 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 |||||||| ||||| |||||||| Sbjct 23 AAGGTTTTCACAAAGATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385125753526464