Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2194 141 7e-28 >seq2194 Length=1538764 Score = 141 bits (156), Expect = 7e-28 Identities = 365/548 (67%), Gaps = 6/548 (1%) Strand=Plus/Minus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 ||||| || || ||||||||||||||||| | | | || || | ||| |||||||| Sbjct 1378449 GCACCGTAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTCCCATTGAAG 1378390 Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 |||| || |||| ||| | ||| |||||||| | |||||| ||||| | |||||| Sbjct 1378389 AAATCCTGCAGGAGTT-TCTGAATCTTGGGAATACGGGTTGATCCACCAACCAGTACAAT 1378331 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| | ||||||||| || ||||| | |||| | | || || || || || || Sbjct 1378330 GTCATGGATCTGTGATTTGTCTAGTTTGGCATCCCGCAGGGCCTTCTCCACAGGATCCAG 1378271 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 282015 | | | |||| || | | | ||||| || |||||| |||| | | | Sbjct 1378270 AGTGCCACGGAACAGATCAGCATTTAACTCTTCAAAACGAGCTCTGGTAATTGAGGTGTA 1378211 Query 282016 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075 | ||||||| || || | | || |||| |||||| | | ||||| |||||| || Sbjct 1378210 AAAATCAATGCCCTCATAGAGCGAGTCAATTTCAATACTGGCCTGAGTGCTAGAAGAGAG 1378151 Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT-TGAT 282134 | ||| |||||||||||||||||||| | ||| | || | || | | || | | | Sbjct 1378150 AGTACGCTTAGCACGTTCACATGCTGTGCGTAGCCGGCGAACTGC-TCTCTTGTTCTCAG 1378092 Query 282135 TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAA-CACACCATGTTACAAGACGATTA 282193 | | ||| | || | || | |||||| || ||| | | || | || | ||| ||| Sbjct 1378091 TAATATCCTTCTTGTGCTTACGCTTGAATTCAGCAATGAAATGAT-TGACCATACGGTTA 1378033 Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 ||||| || || || || || | |||| || | || | | |||| || | ||| Sbjct 1378032 TCAAAGTCCTCCCCACCTAAGTGGGTATCACCAGCAGTTGACTTCACTTCAAAGATGCCA 1377973 Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313 || |||| || | | | |||||| || ||||| || | ||||| ||||| ||| Sbjct 1377972 TCCTCAATAGTGAGGATTGAAACATCGAAAGTGCCACCCCCAAGGTCAAAGATAAGGACA 1377913 Query 282314 TTCATTTC 282321 ||| |||| Sbjct 1377912 TTCCTTTC 1377905 Score = 100 bits (110), Expect = 2e-15 Identities = 104/135 (77%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 282339 CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGAC 282398 |||| ||||| |||| ||||||||||||||||||||| || || || | |||||||||| Sbjct 1377786 CAAG-CCATAAGCAATAGCAGCAGCAGTTGGTTCATTGATGATCCTGAGCACATTAAGAC 1377728 Query 282399 CAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAA 282458 | ||||| |||| |||||||| ||||| || | || || || || || || || || | Sbjct 1377727 CTGCAATGGTTCCAGCATCTTTTGTGGCCTGGCGCTGGGAGTCATTGAAGTAGGCTGGTA 1377668 Query 282459 CAGTAATAACGGCAT 282473 | || | || |||| Sbjct 1377667 CCGTGACCACTGCAT 1377653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739653197714304