Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq6542 120 5e-22 >seq6542 Length=4161791 Score = 120 bits (132), Expect = 5e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 |||||| | || ||||||||||||| | || ||||| || || ||| | || ||| | Sbjct 1151719 GATAGCTGGTGCTTTATGGTGGTACTTCCTCTCAAAAGGAATTGAGTACCTGGACACAAT 1151778 Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTT 58488 |||||||| || ||||| || ||||| || | || || || ||||| ||||| ||||| Sbjct 1151779 ATTTTTCATCCTGAGGAAGAAATTTAACCAAATCAGTTTCCTTCACGTCTATCACCATTT 1151838 Query 58489 TACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 |||||||| ||||| | ||| | ||||| || ||| || ||||||| || Sbjct 1151839 CACTATGTTCACTTTGTGGTGGATTGGTATCAAGTGGGTTCCAGGAGGACA 1151889 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 58673 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTTTCCA 58732 || |||||| | || | || || || || ||||| ||||| || || || || || || Sbjct 1162481 CAGTTCCATGTGACTCTGGGCCACACAGCCATGTCTATTTATATCGACTGTCCCTTCCCT 1162540 Query 58733 AAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGGTAAC 58792 ||||||| ||| ||| || || |||||| |||| || ||||| || ||||| |||||| Sbjct 1162541 AAATGGATGCACTGGGGTGTAATGATCTATGCTATCACCTTTATTTTCTTGTTCGGTAAC 1162600 Query 58793 TTCTATTTTAGAACATACAA 58812 ||||| | | | ||||| || Sbjct 1162601 TTCTACTATCGGACATATAA 1162620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903186431293440