Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq19881 129 6e-25 seq10545 120 3e-22 seq6590 93.3 4e-14 seq3620 82.4 7e-11 >seq19881 Length=10700766 Score = 129 bits (142), Expect = 6e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| || || ||| | | | || || |||| Sbjct 10194052 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCT 10194110 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| ||||||||| || ||||||||||| ||||| ||||| Sbjct 10194111 GCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGGATCT 10194170 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | || | | ||||| ||||| |||||||||| || | ||||| ||| ||||| | Sbjct 10194171 TGGCTTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCAG 10194230 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || |||||||| Sbjct 10194231 TCAGGGTCTTCACAAAGATCTGCAT 10194255 Score = 129 bits (142), Expect = 6e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| || || ||| | | | || || |||| Sbjct 10194280 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCT 10194338 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| ||||||||| || ||||||||||| ||||| ||||| Sbjct 10194339 GCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGGATCT 10194398 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | || | | ||||| ||||| |||||||||| || | ||||| ||| ||||| | Sbjct 10194399 TGGCTTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCAG 10194458 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || |||||||| Sbjct 10194459 TCAGGGTCTTCACAAAGATCTGCAT 10194483 Score = 129 bits (142), Expect = 6e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| || || ||| | | | || || |||| Sbjct 10194508 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCT 10194566 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| ||||||||| || ||||||||||| ||||| ||||| Sbjct 10194567 GCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGGATCT 10194626 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | || | | ||||| ||||| |||||||||| || | ||||| ||| ||||| | Sbjct 10194627 TGGCTTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCAG 10194686 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || |||||||| Sbjct 10194687 TCAGGGTCTTCACAAAGATCTGCAT 10194711 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| || || ||| | | | || || |||| Sbjct 10193483 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCT 10193541 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| ||||||||| || ||||||||||| ||||| ||||| Sbjct 10193542 GCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGGATCT 10193601 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | || | | ||||| ||||| |||| || || || | ||||| ||| ||||| | Sbjct 10193602 TGGCTTTCACGTTCTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAG 10193661 Query 133636 TCAGAGTTTTTACGAAAATCTGCATGG 133662 |||| || || || || |||||||||| Sbjct 10193662 TCAGGGTCTTCACAAAGATCTGCATGG 10193688 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| || || ||| | | | || || |||| Sbjct 10194736 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCT 10194794 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| ||||||||| || ||||||||||| ||||| ||||| Sbjct 10194795 GCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGGATCT 10194854 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | || | | ||||| ||||| |||| || || || | ||||| ||| ||||| | Sbjct 10194855 TGGCTTTCACGTTCTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAG 10194914 Query 133636 TCAGAGTTTTTACGAAAATCTGCATGG 133662 |||| || || || || |||||||||| Sbjct 10194915 TCAGGGTCTTCACAAAGATCTGCATGG 10194941 >seq10545 Length=227 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| || || ||| | | | || || |||| Sbjct 204 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCT 146 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| ||||||||| || ||||||||||| ||||| ||||| Sbjct 145 GCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGGATCT 86 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | || | | ||||| ||||| |||| || || || | ||||| ||| ||||| | Sbjct 85 TGGCTTTCACGTTCTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAG 26 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || |||||||| Sbjct 25 TCAGGGTCTTCACAAAGATCTGCAT 1 >seq6590 Length=2399769 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 133557 CCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCG 133616 ||||||||||| ||||| ||||| | ||| | |||||| |||||||||| ||| Sbjct 1991405 CCTTCCTTGTCCTGAATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCG 1991464 Query 133617 ACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| ||||||||| ||||| ||||| ||||| |||||||| Sbjct 1991465 AGGGTGATGGTTTTGCCCGTCAGGGTTTTCACGAAGATCTGCAT 1991508 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 133557 CCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCG 133616 ||||||||||| ||||| ||||| | ||| | |||||| |||||||||| ||| Sbjct 1991605 CCTTCCTTGTCCTGAATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCG 1991664 Query 133617 ACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| ||||||||| ||||| ||||| ||||| |||||||| Sbjct 1991665 AGGGTGATGGTTTTGCCCGTCAGGGTTTTCACGAAGATCTGCAT 1991708 >seq3620 Length=164711 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||| || || || | |||||| |||||||| ||||| |||| ||||| || | Sbjct 109506 TGTACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGT 109565 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||||| || || || | ||||||||||| |||||| || Sbjct 109566 TGCTCTTCCTATTACAAGAGTCCTTGTACAACATGTAAGG 109605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483300524904960