Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq19868 219 5e-52 seq2733 156 5e-33 seq8015 136 5e-27 >seq19868 Length=9953378 Score = 219 bits (242), Expect = 5e-52 Identities = 584/881 (66%), Gaps = 15/881 (2%) Strand=Plus/Plus Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179 ||| || ||||| || || | ||| || |||| || ||||| || | || ||| Sbjct 26298 ATCAAATTTGTTAGCAAATAAGTGGTGT---TTCTGTAACATCCAGTTCAAGTCTCCCAC 26354 Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 ||| || || ||||| || ||||| || | || ||||||| ||||| |||| || | Sbjct 26355 TCCAAATACACACACAGAACGCACATGAATTCCATTGCACGGAGGATAGGGGGCACCTTT 26414 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 |||||||||||| | || |||||||| || ||||| | | ||| | |||||| || Sbjct 26415 TGACACATCCCCCTCAAAATAATGCCACTTCACAAACCTCGCAAGAGCATTCATGTCAGA 26474 Query 162300 GGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | || ||||||| |||| || | ||||| || ||||| | || | ||| || | || Sbjct 26475 AATATCATACTTGT-CACTGGAAGAAACGGCCCCTGGAACTTCAGGGATTCTTTGAATAG 26533 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 ||||||||| || ||| || || ||||| || || || | ||| || || ||||| || Sbjct 26534 TAGCCCACAAGTATTCATCGGGGCTATATGTATCTTTAGCCCATTCAATAAACTCAAGGA 26593 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 | | | | ||| | || || | ||| | ||| ||| || || || | Sbjct 26594 TTTTGCTGTTTTCTAGCACATACTCTACAAATCTCCTACTAGCAACAAAATAGGCACTGC 26653 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 |||| || || ||| | | | ||| || || | ||||||| ||| |||| || Sbjct 26654 CAGAGAAAACAGGTGTACTGAGAGGTGGAGGTTGTTTGTCTATTCCCATGTTCTTTAGTT 26713 Query 162539 TTCCCTCTACGACCACGT-GTCTCTTCCTCCACCTGGCCATC-TTACTGGTAGACGGGTG 162596 | || || || | | | || | || |||| | | || || |||| || | | Sbjct 26714 TACCATCAACAATTTCATAGTGT-TTTTTCCATC-GTATTTCTTTGCTGGAAGGCATTTT 26771 Query 162597 TTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATT 162656 || || |||| ||||| |||| | ||| |||| | ||| || || | || Sbjct 26772 CTCAGTTTCTAAGCTGTTTTCACCCTTTAGGGCTTTCAATTTCTCCACAATTTCCTGGTT 26831 Query 162657 GGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAG 162716 |||||||| ||||||||| | || || | ||| || | ||||||||| || | || Sbjct 26832 GGTCTTAATGGGAAAGTCCATACCACATAAATTTATCAAATATTTCCAGTTCATACTTCT 26891 Query 162717 TCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACAC 162776 || ||| ||||| | | ||||| || |||||||| || | ||||| || || ||||| Sbjct 26892 TCTGTAGAGATCTTTCATGCAGTTGAGGTCGGCCTGTACCCTGCTCCATGAAGCATACAC 26951 Query 162777 GACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCAC 162836 || || ||||| |||| | ||||||||| |||||| || || || ||| | || Sbjct 26952 TACACTTTCCAATTGGCTGGCAATAAAGACATTACTGAAACAGGACACAATTCCCTTAAC 27011 Query 162837 GGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTG 162893 | ||| |||| | || || | || | || || || | |||||| |||||| Sbjct 27012 TG-CAGCCAGAAAAGATTCTGG--AGACTTTTTGTCAACATGAATGCAGTAATAATTCTG 27068 Query 162894 AGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGAT 162953 ||| || ||||| | || || | ||| || | ||| ||||| || || | || || || Sbjct 27069 AGGTGCATAGATTGATCTTAGAAGTCTATCAAGCATGTCTATTTTGTGATATATGACTAT 27128 Query 162954 AGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 ||||| || || || || ||||| ||||| |||||||| Sbjct 27129 TGAATAGGCAATTGGAAATTCAGCTTCCTCTTTACTGAGAG 27169 >seq2733 Length=9440796 Score = 156 bits (172), Expect = 5e-33 Identities = 379/565 (67%), Gaps = 13/565 (2%) Strand=Plus/Minus Query 176975 CACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGATGTTCCGAG 177034 ||| |||||||||| ||| | || | ||||| || || || ||||| |||| || | Sbjct 1543326 CACATGAATGAAAGAATCTGCTGGAATATAATTCTCATAGTTTTCTCTGGATGGGCCCAA 1543267 Query 177035 TACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAATATAGTCCCT 177094 ||| | ||||| | || |||| || || ||| |||||||| |||||||| || | Sbjct 1543266 TACAACTGGTACAGATCCAGCCAAAAAAGCATTGTAAAGTTTTTCAGTAATATAATCTTT 1543207 Query 177095 GTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAGGAAGATAGTAGCGGGA-TGAAGT 177153 ||| | ||||| ||||| | || || |||||||| | ||| | ||| ||| | |||| Sbjct 1543206 GTGAATTGAGTTTTCAAAGGACAGGTAAAATTTACAAGTAGAGA-TAGTTGGAATCAAGT 1543148 Query 177154 CATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTATGTGTTTAC 177213 | ||| | ||| ||||| | | | | ||| || ||| || || | | ||| | Sbjct 1543147 TTTTATCATTCACATAGTCTCCAAATGCTTGCCCATAGGTATGGATTTCGGTATATTTGC 1543088 Query 177214 TGAGCTCTAGGTAGTATCTCGATCTCACGTGGTCGTTGTTCCAATTGCTGACGACCCAGC 177273 | ||||| ||||| | || | || ||| |||||| || || |||||||| | Sbjct 1543087 TTAGCTCATTATAGTACTTTACTCGAGCATGCTCGGGGTTCCAGTTACTTACGACCCAAC 1543028 Query 177274 AAACTAACTTGCTCTTTGCGGGAACGGGA-TTCGATACTAATGCAGTGTCTCTGAGCGTT 177332 | ||||| || |||||||| ||| | ||| | ||| | | | | | | || Sbjct 1543027 ACACTAATTT-CTCTTTGCT----CGGCACTTCAAAGGTAAAGGGGCTTGTGCTAACCTT 1542973 Query 177333 AGTGAT-CCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAACGTGAGATTGAA 177391 ||| ||||| ||||| |||||||| || || || | || || | || || ||||| Sbjct 1542972 CATGAAGCCATAAGGCACTTGAATATCTGAATCACGCCGATAAGTCAGGGTCAGGTTGAA 1542913 Query 177392 AAGGTTTTCTATACC--TTGTTTGAAGGGGCTGTTACTGGGCGATTCTAAGTTCATCCAT 177449 |||| ||| || || || |||| | | ||| | | || || || ||||||||||| Sbjct 1542912 CAGGTGTTCAATGCCACTTTTTTGTGGCG--TGTGAGTTGGAGACTCCAAGTTCATCCAA 1542855 Query 177450 ATCCACTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGTATAAGGATCTATACTTATC 177509 |||||||| ||||| | || || | || | ||||| | || |||| || || Sbjct 1542854 ATCCACTTCTGAAATGGCGGCCTAGCTTGCTGAGGTAAATTAGTGAGATCCCAGCTGATA 1542795 Query 177510 TCTCTGTGGTGAAAGACTACGGCAT 177534 ||||||||||||| | ||||||| Sbjct 1542794 TCTCTGTGGTGAATAAGGACGGCAT 1542770 >seq8015 Length=4129873 Score = 136 bits (150), Expect = 5e-27 Identities = 241/347 (69%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 162640 CGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATAT 162699 ||||| ||||| |||||||| ||||| ||||||||||||||| || | | || Sbjct 1371342 CGCACGATCTCGGCGTTGGTCTTGAGGGGGAAGTCGGTGCCGCAGGTGTTGAGGAGGTAG 1371401 Query 162700 TTCCACTTAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCG 162758 ||| ||| | |||| | ||| |||| | |||||||| || ||||| || | Sbjct 1371402 CGCCAGGGCACGGGGC-TCCGGAGCAGCTCCTCCATGCAGTTCAGGTCCGCCTGCACCCT 1371460 Query 162759 ACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACA 162818 ||| ||||||||||| || | |||| ||| |||| | |||||| |||| ||| || Sbjct 1371461 GGCCCAGGACGCGTACACCACTCGCTCCGTCCTGCTGGCCAAAAAGACGTTGTGGAAGCA 1371520 Query 162819 CGAAACTATCCCCATCACGGCCAGTGAGAACA--TCGGGTCCGCTTTCCTATCTACGTGT 162876 || | || | | ||||||| |||| ||||| | || || ||||| Sbjct 1371521 GGAGGCGATGCGCCGCACGGCCTCCCTGAACTCGTCGGGG--GACTTGAGGTCCACGTGG 1371578 Query 162877 ACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATC 162936 |||||||| | ||||| || |||||||||| | ||| | |||||||||||||| | | Sbjct 1371579 ACGCAGTAGATGTTCTGGGGCGCGTAGATGGAGCGCAGCAGCCTCTCGAACATCTCGACC 1371638 Query 162937 TTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 || | ||| ||||| || || || || || ||||| || ||||||| Sbjct 1371639 TTGTCGTGCACCACCATGGAGTAGGCGATCGGGAAATCCTCCTCCTC 1371685 Score = 82.4 bits (90), Expect = 9e-11 Identities = 217/325 (67%), Gaps = 11/325 (3%) Strand=Plus/Plus Query 162060 CAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTC-TCGTTCCT 162118 ||||| ||| || || |||| ||| || || ||||||| ||| ||| ||| || Sbjct 1370795 CAGGGCCTTGTGCCGCAGATGCTCCTCCAGGCACTGGATTGCGCT---GTCATCGACACT 1370851 Query 162119 CA--TCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCC 162176 || |||||||| |||| ||||||||| | ||| || ||||| | || ||||| Sbjct 1370852 GGGGTCAAACTTGTTGGCGAGCAGGTGATGGG---TCTGCAGCATCCAGTGGAGGTCCCC 1370908 Query 162177 CGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCC 162236 | ||| |||| || |||| ||| ||| | || |||| ||||| || | ||||| Sbjct 1370909 CACCCCGTACACACAGACGGCGCGCCGGTGGGCCCCCGTGCAGGGCGGGTAGGGTGCCCC 1370968 Query 162237 ATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTC 162296 | ||||||||||| ||||| |||||| || | || | | || | | || Sbjct 1370969 CCTGCTGACATCCCCCTCCAGGTATTCCCACTTCACCAGTCTGGCCACGGCGTTGACATC 1371028 Query 162297 GGAGGTGTCGTACTTGTACACTG-ACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTA 162355 ||| || ||||||| | || | || |||| || || | ||||||| | || | Sbjct 1371029 GGACACCTCATACTTGT-CGTTGTAGGGGACGGAGCCCGGCATGCCCGGCATGCGGTGCA 1371087 Query 162356 GAGTAGCCCACAGGTGTTCGTCTGG 162380 | || ||||||| ||| ||||| || Sbjct 1371088 GGGTGGCCCACACGTGCTCGTCGGG 1371112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578288086118400