Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq7604 125 5e-24 seq8631 113 3e-20 seq19881 111 1e-19 seq10545 102 5e-17 >seq7604 Length=1415154 Score = 125 bits (138), Expect = 5e-24 Identities = 169/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 33519 GTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATC 33578 || |||||| | | |||| ||||| || |||||| ||||| || |||||||| || Sbjct 1124406 GTTACCACCCCGGAGGCGTAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTC 1124465 Query 33579 GGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTG 33638 || || ||||| |||| |||| || || || ||||| ||||| | |||||||||| | Sbjct 1124466 TGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGG 1124525 Query 33639 CGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATT 33697 || | ||||||||||| ||||| | | |||| || | |||||| || | | Sbjct 1124526 AGGAATGCCTTCTTTGTCCTGGATTTT-GGCCTTGACATTCTCAATGGTGTCACTGGGCT 1124584 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | ||||| || || ||||| || ||||| ||||||||||||||| Sbjct 1124585 CTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCATA 1124637 Score = 116 bits (128), Expect = 2e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || |||||| ||||| || |||||||| || || || ||||| |||| ||| Sbjct 1124656 ACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCC 1124715 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || || || ||||| ||||| | |||||||||| | || | ||||||||||| Sbjct 1124716 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGG 1124775 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| | | |||| || | |||||| || | || || || | ||||| || || Sbjct 1124776 ATTTT-GGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTT 1124834 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||||| || ||||| ||||||||||||||| Sbjct 1124835 GCCTGTCAAGGTTTTCACAAAGATCTGCATA 1124865 Score = 116 bits (128), Expect = 2e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || |||||| ||||| || |||||||| || || || ||||| |||| ||| Sbjct 1124884 ACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCC 1124943 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || || || ||||| ||||| | |||||||||| | || | ||||||||||| Sbjct 1124944 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGG 1125003 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| | | |||| || | |||||| || | || || || | ||||| || || Sbjct 1125004 ATTTT-GGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTT 1125062 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||||| || ||||| ||||||||||||||| Sbjct 1125063 GCCTGTCAAGGTTTTCACAAAGATCTGCATA 1125093 Score = 116 bits (128), Expect = 2e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || |||||| ||||| || |||||||| || || || ||||| |||| ||| Sbjct 1125112 ACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCC 1125171 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || || || ||||| ||||| | |||||||||| | || | ||||||||||| Sbjct 1125172 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGG 1125231 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| | | |||| || | |||||| || | || || || | ||||| || || Sbjct 1125232 ATTTT-GGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTT 1125290 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||||| || ||||| ||||||||||||||| Sbjct 1125291 GCCTGTCAAGGTTTTCACAAAGATCTGCATA 1125321 Score = 116 bits (128), Expect = 2e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || |||||| ||||| || |||||||| || || || ||||| |||| ||| Sbjct 1125340 ACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCC 1125399 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || || || ||||| ||||| | |||||||||| | || | ||||||||||| Sbjct 1125400 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGG 1125459 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| | | |||| || | |||||| || | || || || | ||||| || || Sbjct 1125460 ATTTT-GGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTT 1125518 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||||| || ||||| ||||||||||||||| Sbjct 1125519 GCCTGTCAAGGTTTTCACAAAGATCTGCATA 1125549 Score = 116 bits (128), Expect = 2e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || |||||| ||||| || |||||||| || || || ||||| |||| ||| Sbjct 1125568 ACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCC 1125627 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || || || ||||| ||||| | |||||||||| | || | ||||||||||| Sbjct 1125628 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGG 1125687 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| | | |||| || | |||||| || | || || || | ||||| || || Sbjct 1125688 ATTTT-GGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTT 1125746 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||||| || ||||| ||||||||||||||| Sbjct 1125747 GCCTGTCAAGGTTTTCACAAAGATCTGCATA 1125777 Score = 114 bits (126), Expect = 8e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || |||||| ||||| || |||||||| || || || ||||| |||| ||| Sbjct 1125796 ACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCC 1125855 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || || || ||||| ||||| | |||||||||| | || | ||||||||||| Sbjct 1125856 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGG 1125915 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| | | |||| || | |||||| || | || || || | ||||| || || Sbjct 1125916 ATTTT-GGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTT 1125974 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| || ||||| |||||||||||||| Sbjct 1125975 GCCTGTCAAGGTTTTCACAAAGATCTGCAT 1126004 >seq8631 Length=204 Score = 113 bits (124), Expect = 3e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || |||||| ||||| || |||||||| || || || ||||| |||| |||| || Sbjct 203 TGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGC 144 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || ||||| ||||| | |||||||||| | || | ||||||||||| ||||| Sbjct 143 TTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTT- 85 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | | |||| || | |||||| || | || || || | ||||| || || ||||| Sbjct 84 GGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGT 25 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 || ||||| |||||||||||||| Sbjct 24 CAAGGTTTTCACAAAGATCTGCAT 1 >seq19881 Length=10700766 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | ||| | ||| || ||| ||| || || |||||||| || || Sbjct 10194028 ACCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 10194087 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || || ||||| |||| | |||||| || | || Sbjct 10194088 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 10194147 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| || || |||| |||| || | |||||| || | |||| Sbjct 10194148 GATGCCTTCTTTGTCCTGGATCTTGGCTTTC-ACATTCTCAATGGTGTCACTGGGCTCCA 10194206 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || ||||||||||||||| Sbjct 10194207 CCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATA 10194256 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | ||| | ||| || ||| ||| || || |||||||| || || Sbjct 10194256 ACCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 10194315 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || || ||||| |||| | |||||| || | || Sbjct 10194316 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 10194375 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| || || |||| |||| || | |||||| || | |||| Sbjct 10194376 GATGCCTTCTTTGTCCTGGATCTTGGCTTTC-ACATTCTCAATGGTGTCACTGGGCTCCA 10194434 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || ||||||||||||||| Sbjct 10194435 CCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATA 10194484 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | ||| | ||| || ||| ||| || || |||||||| || || Sbjct 10194484 ACCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 10194543 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || || ||||| |||| | |||||| || | || Sbjct 10194544 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 10194603 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| || || |||| |||| || | |||||| || | |||| Sbjct 10194604 GATGCCTTCTTTGTCCTGGATCTTGGCTTTC-ACATTCTCAATGGTGTCACTGGGCTCCA 10194662 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || ||||||||||||||| Sbjct 10194663 CCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATA 10194712 Score = 105 bits (116), Expect = 4e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | ||| | ||| || ||| ||| || || |||||||| || || Sbjct 10194712 ACCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 10194771 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || || ||||| |||| | |||||| || | || Sbjct 10194772 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 10194831 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| || || |||| || | || | |||||| || | ||| | Sbjct 10194832 GATGCCTTCTTTGTCCTGGATCTTGGCTTTC-ACGTTCTCAATGGTGTCACTGGGTTCAA 10194890 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 | || | ||||| || || || || | || || |||||||||||||| || Sbjct 10194891 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGGT 10194942 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| ||| | ||| | ||| || ||| ||| || || |||||||| || || Sbjct 10193460 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 10193519 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| | |||||| || | || Sbjct 10193520 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 10193579 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || |||| || | || | |||||| || | ||| || Sbjct 10193580 ATGCCTTCTTTGTCCTGGATCTTGGCTTTC-ACGTTCTCAATGGTGTCACTGGGTTCAAC 10193638 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||| || || || || | || || |||||||||||||| || Sbjct 10193639 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGGT 10193689 >seq10545 Length=227 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| ||| | ||| | ||| || ||| ||| || || |||||||| || || Sbjct 227 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 168 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| | |||||| || | || Sbjct 167 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 108 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || |||| || | || | |||||| || | ||| || Sbjct 107 ATGCCTTCTTTGTCCTGGATCTTGGCTTTC-ACGTTCTCAATGGTGTCACTGGGTTCAAC 49 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 48 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328624262983680