Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq19881 82.4 7e-11 seq3620 82.4 7e-11 >seq19881 Length=10700766 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | ||||| || || ||||||||||| || ||| || | Sbjct 10194041 CGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 10194100 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| || | ||| || || || || ||||||||||| Sbjct 10194101 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTG 10194160 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||||| | || | || || | |||||||| || | || | Sbjct 10194161 TCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATG 10194220 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || |||||||| || || | || |||||||| Sbjct 10194221 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194255 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | ||||| || || ||||||||||| || ||| || | Sbjct 10194269 CGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 10194328 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| || | ||| || || || || ||||||||||| Sbjct 10194329 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTG 10194388 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||||| | || | || || | |||||||| || | || | Sbjct 10194389 TCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATG 10194448 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || |||||||| || || | || |||||||| Sbjct 10194449 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194483 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | ||||| || || ||||||||||| || ||| || | Sbjct 10194497 CGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 10194556 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| || | ||| || || || || ||||||||||| Sbjct 10194557 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTG 10194616 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||||| | || | || || | |||||||| || | || | Sbjct 10194617 TCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATG 10194676 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || |||||||| || || | || |||||||| Sbjct 10194677 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194711 >seq3620 Length=164711 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| ||| ||||| | ||||||||||||||| || ||| ||||| || ||||| | Sbjct 109506 TGTACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGT 109565 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCG 147615 |||| |||| ||| || | ||| ||| | | |||||| || || |||||| Sbjct 109566 TGCTCTTCCTATTACAAGAGTCCTTGTACAACATGTAAGGAGTTCCTGTCTCG 109618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476492619133440