Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5530 154 2e-31 seq7826 104 3e-16 seq4667 86.0 9e-11 >seq5530 Length=105988 Score = 154 bits (170), Expect = 2e-31 Identities = 171/227 (75%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| | ||||| || | ||||| Sbjct 18773 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGGTATT---TCCTCTAA---GGCCATG 18720 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||||||||| |||||||| |||| ||||| | || || ||| Sbjct 18719 GGCATCATGAACTCGTTTGTGAACGACATCTTCGAGCGCATTGCTGGGGAAGCGTCCCGC 18660 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 || |||| || |||||||||| || ||| | | || |||||||||||||||||||| Sbjct 18659 CTAGCGCACTACAACAAGCGCTCGACCATCACCTCCCGGGAGATCCAGACCGCCGTGCGG 18600 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | ||| ||| |||||||||| ||||||||| || ||||| || Sbjct 18599 CTGCTGCTGCCCGGGGAACTGGCCAAGCACGCCGTGTCTGAGGGTAC 18553 Score = 140 bits (154), Expect = 5e-27 Identities = 168/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| | ||||| || | ||||| Sbjct 27825 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGGTATT---TCCTCTAA---GGCCATG 27772 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||||||||| |||||||| |||| ||||| | || || ||| Sbjct 27771 GGCATCATGAACTCGTTTGTGAACGACATCTTCGAGCGCATTGCTGGGGAAGCGTCCCGC 27712 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 || |||| || |||||||||| || ||| | | || |||||||||||||||||||| Sbjct 27711 CTAGCGCACTACAACAAGCGCTCGACCATCACCTCCCGGGAGATCCAGACCGCCGTGCGG 27652 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | ||| || || ||||| | ||||||||| || ||||| || Sbjct 27651 CTGCTGCTGCCTGGGGAGCTGGCTAAGCACGCCGTGTCTGAGGGTAC 27605 Score = 140 bits (154), Expect = 5e-27 Identities = 169/229 (74%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| ||||| |||| | ||||| || | ||||| Sbjct 81233 TACAAGGTGCTGAAGCAGGTTCACCCTGACACCGGTATT---TCCTCTAA---GGCCATG 81286 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||||||||| |||||||| |||| ||||| | || || ||| Sbjct 81287 GGCATCATGAACTCGTTTGTGAACGACATCTTCGAGCGCATTGCTGGGGAAGCGTCCCGC 81346 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 || |||| || |||||||||| || ||| | | || |||||||||||||| |||||| Sbjct 81347 CTAGCGCACTACAACAAGCGCTCGACCATCACCTCCCGGGAGATCCAGACCGCTGTGCGC 81406 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| || || ||||| | ||||||||| || |||||||||| Sbjct 81407 CTGCTGCTGCCTGGAGAGCTGGCTAAGCACGCCGTGTCTGAGGGCACCA 81455 Score = 136 bits (150), Expect = 6e-26 Identities = 167/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| | ||||| || | ||||| Sbjct 73303 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGGTATT---TCCTCTAA---GGCCATG 73356 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||| ||||| |||| ||||| | ||||| ||| Sbjct 73357 GGCATCATGAACTCCTTCGTCAATGACATCTTCGAGCGCATTGCTGGGGAGGCGTCCCGC 73416 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||| ||| || ||| | | || |||||||||||||||||||| Sbjct 73417 CTGGCGCACTACAACAAACGCTCGACCATCACCTCCCGGGAGATCCAGACCGCCGTGCGG 73476 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | ||| || || ||||| | ||||||||| || ||||| || Sbjct 73477 CTGCTGCTGCCTGGGGAGCTGGCTAAGCACGCCGTGTCTGAGGGTAC 73523 >seq7826 Length=213159 Score = 104 bits (114), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| ||||||||||| || || ||| | || | | || ||| Sbjct 173512 TCTACAAGGTGCTGAAGCAGGTGCATCCAGACAC----GGGTATTTCTTCTA--AGGCCA 173459 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||| || || || | ||| | |||| ||||| | ||||||| | Sbjct 173458 TGAGCATCATGAATTCTTTCGTGAGCGATCTCTTCGAGCGCATTGCTGCCGAGGCGTCAC 173399 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 || |||| | ||||||||| || ||| | |||| || |||||||||||||||| Sbjct 173398 GCTTGGCTTTGTACAACAAGCGATCGACCATCAGTTCGCGAGAAATCCAGACCGCCGTGC 173339 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| | ||| ||| || |||||| |||||| || || || ||||| Sbjct 173338 GCCTGCTGCTGCCCGGGGAGTTGGCCAAGCACGCGGTGTCGGAAGGCAC 173290 >seq4667 Length=1791408 Score = 86.0 bits (94), Expect = 9e-11 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023 |||| ||||| ||||||||||| ||||| || ||||| |||| ||||| | || Sbjct 1596224 CAAGGCCATGGGCATCATGAACTCCTTTGTAAATGACATTTTCGAGCGCATTGCGGGGGA 1596165 Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083 ||| |||| |||| | | || |||||| || ||| | || ||||||||||| Sbjct 1596164 AGCCTCTCGCTTGGCTCATTATAATAAGCGCTCAACCATCACTTCCCGTGAGATCCAGAC 1596105 Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||||| ||| | ||| || || ||||||| || || || || |||||||| Sbjct 1596104 TGCAGTGCGTCTGCTTCTGCCGGGGGAGCTGGCCAAACATGCGGTGTCTGAGGGCAC 1596048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175891422616448