Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq7604 122 8e-23 seq8631 120 3e-22 seq19881 113 4e-20 seq10545 113 4e-20 >seq7604 Length=1415154 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | || ||| ||| |||| ||||||||||| || ||||| Sbjct 1125814 TCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAG 1125873 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| |||||| || | ||||| || || |||||| ||| || ||| | | | Sbjct 1125874 ATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTC 1125933 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || || || | ||||| || || || ||||| ||||||||| Sbjct 1125934 TCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACA 1125993 Query 35726 AATATCTGCATT 35737 || ||||||||| Sbjct 1125994 AAGATCTGCATT 1126005 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | || ||| ||| |||| ||||||||||| || ||||| Sbjct 1124446 TCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAG 1124505 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| |||||| || | ||||| || || |||||| ||| || ||| | | | Sbjct 1124506 ATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTC 1124565 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || || || | ||||| || || || ||||| ||||||||| Sbjct 1124566 TCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACA 1124625 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 1124626 AAGATCTGCAT 1124636 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | || ||| ||| |||| ||||||||||| || ||||| Sbjct 1124674 TCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAG 1124733 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| |||||| || | ||||| || || |||||| ||| || ||| | | | Sbjct 1124734 ATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTC 1124793 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || || || | ||||| || || || ||||| ||||||||| Sbjct 1124794 TCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACA 1124853 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 1124854 AAGATCTGCAT 1124864 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | || ||| ||| |||| ||||||||||| || ||||| Sbjct 1124902 TCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAG 1124961 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| |||||| || | ||||| || || |||||| ||| || ||| | | | Sbjct 1124962 ATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTC 1125021 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || || || | ||||| || || || ||||| ||||||||| Sbjct 1125022 TCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACA 1125081 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 1125082 AAGATCTGCAT 1125092 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | || ||| ||| |||| ||||||||||| || ||||| Sbjct 1125130 TCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAG 1125189 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| |||||| || | ||||| || || |||||| ||| || ||| | | | Sbjct 1125190 ATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTC 1125249 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || || || | ||||| || || || ||||| ||||||||| Sbjct 1125250 TCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACA 1125309 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 1125310 AAGATCTGCAT 1125320 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | || ||| ||| |||| ||||||||||| || ||||| Sbjct 1125358 TCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAG 1125417 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| |||||| || | ||||| || || |||||| ||| || ||| | | | Sbjct 1125418 ATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTC 1125477 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || || || | ||||| || || || ||||| ||||||||| Sbjct 1125478 TCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACA 1125537 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 1125538 AAGATCTGCAT 1125548 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | || ||| ||| |||| ||||||||||| || ||||| Sbjct 1125586 TCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAG 1125645 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| |||||| || | ||||| || || |||||| ||| || ||| | | | Sbjct 1125646 ATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTC 1125705 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || || || | ||||| || || || ||||| ||||||||| Sbjct 1125706 TCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACA 1125765 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 1125766 AAGATCTGCAT 1125776 >seq8631 Length=204 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | || ||| ||| |||| ||||||||||| || ||||| Sbjct 191 TCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAG 132 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| |||||| || | ||||| || || |||||| ||| || ||| | | | Sbjct 131 ATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTC 72 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || || || | ||||| || || || ||||| ||||||||| Sbjct 71 TCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACA 12 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 11 AAGATCTGCAT 1 >seq19881 Length=10700766 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 10193495 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 10193554 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || || |||||| |||||| |||| | Sbjct 10193555 GATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTT 10193614 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||| ||||||| ||||| || || || |||| || ||||| Sbjct 10193615 CTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 10193674 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 10193675 AAAGATCTGCAT 10193686 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 10194064 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 10194123 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || || |||||| |||||| |||| | | Sbjct 10194124 GATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTCACATT 10194183 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||| | ||||| || || || |||| || ||||| Sbjct 10194184 CTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 10194243 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 10194244 AAAGATCTGCAT 10194255 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 10194292 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 10194351 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || || |||||| |||||| |||| | | Sbjct 10194352 GATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTCACATT 10194411 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||| | ||||| || || || |||| || ||||| Sbjct 10194412 CTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 10194471 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 10194472 AAAGATCTGCAT 10194483 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 10194520 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 10194579 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || || |||||| |||||| |||| | | Sbjct 10194580 GATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTCACATT 10194639 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||| | ||||| || || || |||| || ||||| Sbjct 10194640 CTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 10194699 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 10194700 AAAGATCTGCAT 10194711 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 10194748 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 10194807 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || || |||||| |||||| |||| | Sbjct 10194808 GATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTT 10194867 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||| ||||||| ||||| || || || |||| || ||||| Sbjct 10194868 CTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 10194927 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 10194928 AAAGATCTGCAT 10194939 >seq10545 Length=227 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 192 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 133 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || || |||||| |||||| |||| | Sbjct 132 GATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTT 73 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||| ||||||| ||||| || || || |||| || ||||| Sbjct 72 CTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 13 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 12 AAAGATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450681442552320