Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq19887 136 3e-27 seq3895 104 2e-17 seq4256 100 2e-16 >seq19887 Length=6038298 Score = 136 bits (150), Expect = 3e-27 Identities = 123/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 ||||| ||||| || || || | || |||||||| ||| ||||||||||||||| Sbjct 4354368 ATGGCTTTGCCTCCATGCCACGCCCTTTGCCAGTTTTATGTTCTAAATGGTGAACTGTCA 4354309 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 || || |||||||| ||||| || ||||||||||||||||| || || || || || ||| Sbjct 4354308 TGCCAGTTGTATCAGAGATCTGGAGACATGGGACTAGGGGTGCCTTTCAATATCGCCAGT 4354249 Query 41169 TATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 ||| | |||||||| ||||||||||| || || || Sbjct 4354248 TATTCACTGCTCACATATATGATTGCCCATGTCAC 4354214 >seq3895 Length=4157194 Score = 104 bits (114), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 ||||||| |||||||| ||||| |||||||| ||||||| ||||||||||| ||||| | Sbjct 2203425 AAAACCCTTTTGATTTCATGGAGAATATTTCACTGGAAGGAAAAACAAACTTCTTTGAGA 2203484 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609 | || ||| ||| |||||||| | | || ||| ||||| |||||| || | Sbjct 2203485 AGCGGGTTTCAGAGTATCAGCGCTTTGCAGTTATGGCAGAAACAACGGACAATGTTTTCA 2203544 Query 44610 CTACGGATGAAGATTTCTAAT 44630 || ||||| ||||||||||| Sbjct 2203545 CTCTGGATGCAGATTTCTAAT 2203565 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || ||||| ||| | |||||||| || ||||| ||||| ||||| ||| || || ||| Sbjct 2189912 CAGGAAGTGCAAATCCCAGAAGCTCGCTGTTTCTATGGCTTTCAGATTTTAATTGAGAAT 2189971 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||| ||||| ||||||||| | |||||||| || |||||||||||| Sbjct 2189972 GTTCACTCGGAGATGTACAGTTTGCTGATAGACACTTACATCAAAGAT 2190019 >seq4256 Length=2845976 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| || || | ||||| || | ||| ||||| || || ||||| || |||||| Sbjct 150640 CAAGAAGTACAGATAACTGAAGCTCGCTTTTTCTATGGCTTCCAGATTGCTATGGAAAAT 150581 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||||||||| || ||||| || ||||| |||||| Sbjct 150580 ATACATTCAGAAATGTACAGTCTGCTCATAGACACTTACATTAAAGAT 150533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397359585123520