Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3620 86.0 7e-12 seq3895 82.4 8e-11 >seq3620 Length=164711 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 ||||||||||||| || |||||||||| || | ||||| ||||||||||||| Sbjct 109517 ATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTA 109576 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACG 79224 ||||| | ||||||||| ||||||| || || || ||||| |||| || | | | Sbjct 109577 TTACAAGAGTCCTTGTACAACATGTAAGGAGTTCCTGTCTCGGTCTGAGACTCTATGATG 109636 Query 79225 CCGTCCCAGATGTCCCGGGCCCGGACAACCTT 79256 ||| ||||| | | ||||| || ||||| Sbjct 109637 GCGTACCAGAGCTGCTGGGCCTTCACCACCTT 109668 >seq3895 Length=4157194 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| |||||||||||||||||||| || || || |||||| || ||||| Sbjct 2197191 GCCTTTGC-TGCAGTGGAAGGAATCTTCTTCTCAGGTTCTTTTGCTGCTATATTTTGGCT 2197249 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 || ||| | || || ||||| || |||| |||||||| || || ||| || || || Sbjct 2197250 GAAGAAGAGGGGTCTTATGCCTGGACTGACATTCTCCAATGAACTCATTAGTCGAGATGA 2197309 Query 60110 GG 60111 || Sbjct 2197310 GG 2197311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548388327029760