Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq7397 100 3e-16 seq1603 100 3e-16 seq4256 82.4 8e-11 >seq7397 Length=8916547 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || ||||| ||||||| ||| |||||||||||||||||| || | ||||| || || Sbjct 5928878 GTAAAAATATAACGAGGGCTCGCAGCATCCTTGCCACCATGTAGCCTGGTACCAAACTGA 5928819 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| |||||| || |||||| | ||||| || ||||| || |||||||| |||||| Sbjct 5928818 CCAATCGGCTGCAGGAGGTTAACATTGTTACTTCCAACAAAATTCTGAGCCAAATTGACA 5928759 Query 117425 ATCGT 117429 || || Sbjct 5928758 ATAGT 5928754 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || || || || || | ||| || |||||||||||||| |||| || |||||||| Sbjct 5928878 GTAAAAATATAACGAGGGCTCGCAGCATCCTTGCCACCATGTAGCCTGGTACCAAACTGA 5928819 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| |||||||| | ||||| || || ||||||||||||||||| ||| Sbjct 5928818 CCAATCGGCTGCAGGAGGTTAACATTGTTACTTCCAACAAAATTCTGAGCCAAATTGACA 5928759 Query 152149 ATCGT 152153 || || Sbjct 5928758 ATAGT 5928754 >seq1603 Length=1205265 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | || || ||||| ||||| || || ||||| Sbjct 270011 GTGAAGATGTATCGAGGGCTGGCAGAGTCTTTCCCACCGTGCAGCCTGGTACCGAACTGC 270070 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || || |||||||| ||| |||||| ||||||||||||||||| | | Sbjct 270071 CCAACGGGCTGTAGCAGATTGAGGTTATTGCTGCCCACAAAATTCTGAGCCAAATTAATA 270130 Query 152149 ATCGT 152153 || || Sbjct 270131 ATGGT 270135 >seq4256 Length=2845976 Score = 82.4 bits (90), Expect = 8e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 |||||||| || || | ||| || ||||| | || |||||||| | ||| | ||||||| Sbjct 147939 TCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTCTTCTTC 147998 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 ||||||||||| | ||||| ||| ||||||||| ||||| || ||||| || Sbjct 147999 AACCAAAAGATAGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAGCT 148058 Query 74892 ACAAGGCGTT 74901 || | |||| Sbjct 148059 ACTACACGTT 148068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547079852659200