Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq7604 163 3e-35 seq8631 145 9e-30 seq3620 98.7 1e-15 >seq7604 Length=1415154 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| || || | || |||||||| || || || || || ||| | | Sbjct 1126005 AATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAG 1125946 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||||| ||||| |||||||| || || ||||||||||| || Sbjct 1125945 TGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCA 1125886 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || |||||||| ||||| || || || | || ||||| ||||||| || Sbjct 1125885 GCAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAA 1125826 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||||||||| || || ||| |||| || || ||||| Sbjct 1125825 CATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCGCCTCCGGGGTGG 1125778 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || | || |||||||| || || || || || ||| | || Sbjct 1124864 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1124805 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| ||||| |||||||| || || ||||||||||| ||| Sbjct 1124804 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1124745 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || |||||||| ||||| || || || | || ||||| ||||||| || Sbjct 1124744 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1124685 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||||||||| || || ||| |||| || || ||||| Sbjct 1124684 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCGCCTCCGGGGTGG 1124638 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || | || |||||||| || || || || || ||| | || Sbjct 1125092 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1125033 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| ||||| |||||||| || || ||||||||||| ||| Sbjct 1125032 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1124973 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || |||||||| ||||| || || || | || ||||| ||||||| || Sbjct 1124972 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1124913 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||||||||| || || ||| |||| || || ||||| Sbjct 1124912 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCGCCTCCGGGGTGG 1124866 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || | || |||||||| || || || || || ||| | || Sbjct 1125320 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1125261 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| ||||| |||||||| || || ||||||||||| ||| Sbjct 1125260 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1125201 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || |||||||| ||||| || || || | || ||||| ||||||| || Sbjct 1125200 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1125141 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||||||||| || || ||| |||| || || ||||| Sbjct 1125140 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCGCCTCCGGGGTGG 1125094 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || | || |||||||| || || || || || ||| | || Sbjct 1125548 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1125489 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| ||||| |||||||| || || ||||||||||| ||| Sbjct 1125488 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1125429 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || |||||||| ||||| || || || | || ||||| ||||||| || Sbjct 1125428 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1125369 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||||||||| || || ||| |||| || || ||||| Sbjct 1125368 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCGCCTCCGGGGTGG 1125322 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || | || |||||||| || || || || || ||| | || Sbjct 1125776 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1125717 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| ||||| |||||||| || || ||||||||||| ||| Sbjct 1125716 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1125657 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || |||||||| ||||| || || || | || ||||| ||||||| || Sbjct 1125656 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1125597 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||||||||| || || ||| |||| || || ||||| Sbjct 1125596 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCGCCTCCGGGGTGG 1125550 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || | || |||||||| || || || || || ||| | || Sbjct 1124636 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1124577 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| ||||| |||||||| || || ||||||||||| ||| Sbjct 1124576 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1124517 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || |||||||| ||||| || || || | || ||||| ||||||| || Sbjct 1124516 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1124457 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||||||||| || | ||| | || || || ||||| Sbjct 1124456 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTACGCCTCCGGGGTGG 1124410 >seq8631 Length=204 Score = 145 bits (160), Expect = 9e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || | || |||||||| || || || || || ||| | || Sbjct 1 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 60 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| ||||| |||||||| || || ||||||||||| ||| Sbjct 61 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 120 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || |||||||| ||||| || || || | || ||||| ||||||| || Sbjct 121 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 180 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||| || ||||||||||| || Sbjct 181 ATCCAGAAAGAATCCACTCTGCA 203 >seq3620 Length=164711 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| || ||||| ||||||| || |||| || || |||||||| | |||||| Sbjct 109509 ACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGC 109568 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| || |||| ||||||||| ||||||| || || || |||||| ||| |||| Sbjct 109569 TCTTCCTATTACAAGAGTCCTTGTACAACATGTAAGGAGTTCCTGTCTCGGTCTGAGACT 109628 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGG 81111 | |||||||| ||| | || | ||||| |||||||||||| Sbjct 109629 CTATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCTTGCGG 109672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570168506772480