Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq6542 113 5e-20 seq1865 91.5 2e-13 >seq6542 Length=4161791 Score = 113 bits (124), Expect = 5e-20 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 32661 ATAGCCAGAGCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATT 32720 ||||| | || || |||| || || |||| ||||| || || || || || || || Sbjct 1151720 ATAGCTGGTGCTTTATGGTGGTACTTCCTCTCAAAAGGAATTGAGTACCTGGACACAATA 1151779 Query 32721 TTCTTCATAATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTT 32780 || ||||| |||| ||||||||||||||| | || || | ||||| || |||||||| Sbjct 1151780 TTTTTCATCCTGAGGAAGAAATTTAACCAAATCAGTTTCCTTCACGTCTATCACCATTTC 1151839 Query 32781 ACCATGTTTACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 || ||||| ||||| | ||||| || || || ||| || |||||||||| Sbjct 1151840 ACTATGTTCACTTTGTGGTGGATTGGTATCAAGTGGGTTCCAGGAGGACA 1151889 Score = 105 bits (116), Expect = 8e-18 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 32960 GATGCAGTTTCATTTAGCAATAGGTCATACAGCAATGTCTATATATATAGATTGTCCGTT 33019 ||| ||||| ||| | | | || || ||||| |||||||| ||||| || ||||| || Sbjct 1162477 GATTCAGTTCCATGTGACTCTGGGCCACACAGCCATGTCTATTTATATCGACTGTCCCTT 1162536 Query 33020 CCCTAGATGGATACAGTGGGCTGTTATTATATATTCTATCACCTTTATCATCCTTTTTGG 33079 ||||| |||||| || |||| ||| || || ||| ||||||||||||| || | || || Sbjct 1162537 CCCTAAATGGATGCACTGGGGTGTAATGATCTATGCTATCACCTTTATTTTCTTGTTCGG 1162596 Query 33080 CAACTTTTA-TCTCAGGACATATAA 33103 ||||| || | || |||||||||| Sbjct 1162597 TAACTTCTACTATC-GGACATATAA 1162620 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 32832 GCATTTTTTGGAGCACAGATAAATTCTTTTATACATGTTATAATGTATAGTTATTACGGA 32891 || ||||||||||| || || ||||||||||| |||||| | ||||| | || |||||| Sbjct 1154863 GCTTTTTTTGGAGCCCAAATGAATTCTTTTATTCATGTTGTTATGTACATGTACTACGGA 1154922 Query 32892 TTAACAGCAATAGGTCCTTCCTTGCGAAAATATCTATGGTGGAAAAAATATTTAACTATC 32951 ||| | || || ||| || | |||||||| ||||||||| ||| || || || Sbjct 1154923 TTAGCTGCCTGTGGCCCTAAATTTCAGAAATATCTGTGGTGGAAACGATACTTGACCATA 1154982 Query 32952 ATACAA 32957 ||||| Sbjct 1154983 TTACAA 1154988 >seq1865 Length=3787030 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 50969 ACATTGGCTATAACTACCTGATGGTGATATTTACTTAACGCGTTCTTGGCTCTATCTATT 51028 ||||| ||||| || |||||||| |||| || | || ||| || | |||| ||| Sbjct 3082143 ACATTTGCTATCACCACCTGATGACGATACTTCTCCAGAGCCTTCCGGGATTTATCAATT 3082202 Query 51029 AGTATTTCTTCATTTGTTTCTAGTTTAAAGGAAACAACAAATGCTTTTGGGGCCCATTCG 51088 | || | || ||||||| |||||||||| ||||||||||| ||||||||||| Sbjct 3082203 AAGATGGATGGATCAGTTTCTAACTTAAAGGAAATAACAAATGCTTCAGGGGCCCATTCT 3082262 Query 51089 TTAACTAAATGGGCCATCATTTTAGGAACGGCCTTCAT 51126 || |||||| | | || |||||| || || |||||| Sbjct 3082263 TTGACTAAAGGTGACAGCATTTTTGGCACCATCTTCAT 3082300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603030728616960