Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq8015 242 5e-59 >seq8015 Length=4129873 Score = 242 bits (268), Expect = 5e-59 Identities = 318/434 (73%), Gaps = 10/434 (2%) Strand=Plus/Minus Query 13608 GACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGG---TATCTC 13664 || ||| ||||| |||| ||||||| | |||| |||| | || || | |||| Sbjct 1371760 GATTACCTGAACCTGACTCAGGACTGCGCGCTCTTC---AAAGCCGGGCGGAGGTTTCTC 1371704 Query 13665 GTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCAC 13724 | | |||||||||| ||| |||| || || || ||||||||||| || ||| | ||| Sbjct 1371703 GGGTCCCCCCTGAGCCAGGAGGAGGAGGATTTCCCGATCGCCTACTCCATGGTGGTGCAC 1371644 Query 13725 CACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTAC 13784 ||||| |||||||||||||| | || ||| | |||||||||| || |||||| ||||| Sbjct 1371643 GACAAGGTCGAGATGTTCGAGAGGCTGCTGCGCTCCATCTACGCGCCCCAGAACATCTAC 1371584 Query 13785 TGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGC-CATCGC 13843 ||||||||||||||| ||||||| ||||||||||| || ||| |||| |||||| Sbjct 1371583 TGCGTCCACGTGGACCTCAAGTCCCCCGACGAGTTCAGGGAGGCCGT-GCGGCGCATCGC 1371525 Query 13844 CAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGG-CTGCACGACGTGGTGTACGGCTCCT 13902 | ||||||| ||||| ||||| | || | | ||| |||||||||| |||| Sbjct 1371524 CTCCTGCTTCCACAACGTCTTTTTGGCCAGCAGGACGGAGCGA-GTGGTGTACGCGTCCT 1371466 Query 13903 GGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGT 13962 || | |||||||| ||||| | ||||||| ||| ||| | |||||| | Sbjct 1371465 GGGCCAGGGTGCAGGCGGACCTGAACTGCATGGAGGAGCTGCTCCGGAGCCCCGTGCCCT 1371406 Query 13963 GGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCG 14022 || | ||||| |||||| ||||| | |||||||| |||||||||||| ||||||| Sbjct 1371405 GGCGCTACCTCCTCAACACCTGCGGCACCGACTTCCCCCTCAAGACCAACGCCGAGATCG 1371346 Query 14023 TGCGGGCGCTGAAG 14036 ||||| | || ||| Sbjct 1371345 TGCGGACCCTCAAG 1371332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658575305687040