Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq19881 122 8e-23 seq7604 118 9e-22 seq10545 116 3e-21 seq8631 107 2e-18 >seq19881 Length=10700766 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| ||||| || || ||||| |||||| | || || || || || ||||| Sbjct 10193688 CCATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAACCCA 10193629 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 ||| | ||||||| || ||| || || || |||||||||||||| || || || | Sbjct 10193628 GTGACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACC 10193569 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||| | | || | || ||||| || ||||||| | ||| | || || |||| Sbjct 10193568 AGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACA 10193509 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||| || |||||||| ||| | ||| | || ||||| || | |||||| Sbjct 10193508 ACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGGC 10193459 Score = 122 bits (134), Expect = 8e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| ||||| || || ||||| |||||| | || || || || || ||||| Sbjct 10194941 CCATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAACCCA 10194882 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 ||| | ||||||| || ||| || || || |||||||||||||| || || || | Sbjct 10194881 GTGACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACC 10194822 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||| | | || | || ||||| || ||||||| | ||| | || || |||| Sbjct 10194821 AGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACA 10194762 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || |||||||| ||| | ||| | || ||||| || | ||||| || Sbjct 10194761 ACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGGTAT 10194710 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| |||||| | || || || || ||||| || Sbjct 10194255 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTGGAGCCCAGT 10194196 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| || || || |||||||||||||| || || || || Sbjct 10194195 GACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCAG 10194136 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | ||| | || || |||||| Sbjct 10194135 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 10194076 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | ||| | || ||||| || | ||||| || Sbjct 10194075 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGGTAT 10194026 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| |||||| | || || || || ||||| || Sbjct 10194483 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTGGAGCCCAGT 10194424 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| || || || |||||||||||||| || || || || Sbjct 10194423 GACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCAG 10194364 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | ||| | || || |||||| Sbjct 10194363 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 10194304 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | ||| | || ||||| || | ||||| || Sbjct 10194303 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGGTAT 10194254 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| |||||| | || || || || ||||| || Sbjct 10194711 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTGGAGCCCAGT 10194652 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| || || || |||||||||||||| || || || || Sbjct 10194651 GACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCAG 10194592 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | ||| | || || |||||| Sbjct 10194591 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 10194532 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | ||| | || ||||| || | ||||| || Sbjct 10194531 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGGTAT 10194482 >seq7604 Length=1415154 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||| |||||| | || || || ||||| || || Sbjct 1124864 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1124805 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||||| || |||||||||||||| || || ||||| Sbjct 1124804 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1124745 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || |||||||| | ||| | || || |||||| Sbjct 1124744 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1124685 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || || | || |||| |||| | |||||||| || Sbjct 1124684 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCGCCTCCGGGGTGGTAT 1124635 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||| |||||| | || || || ||||| || || Sbjct 1125092 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1125033 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||||| || |||||||||||||| || || ||||| Sbjct 1125032 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1124973 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || |||||||| | ||| | || || |||||| Sbjct 1124972 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1124913 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || || | || |||| |||| | |||||||| || Sbjct 1124912 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCGCCTCCGGGGTGGTAT 1124863 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||| |||||| | || || || ||||| || || Sbjct 1125320 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1125261 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||||| || |||||||||||||| || || ||||| Sbjct 1125260 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1125201 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || |||||||| | ||| | || || |||||| Sbjct 1125200 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1125141 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || || | || |||| |||| | |||||||| || Sbjct 1125140 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCGCCTCCGGGGTGGTAT 1125091 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||| |||||| | || || || ||||| || || Sbjct 1125548 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1125489 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||||| || |||||||||||||| || || ||||| Sbjct 1125488 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1125429 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || |||||||| | ||| | || || |||||| Sbjct 1125428 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1125369 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || || | || |||| |||| | |||||||| || Sbjct 1125368 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCGCCTCCGGGGTGGTAT 1125319 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||| |||||| | || || || ||||| || || Sbjct 1125776 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1125717 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||||| || |||||||||||||| || || ||||| Sbjct 1125716 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1125657 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || |||||||| | ||| | || || |||||| Sbjct 1125656 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1125597 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || || | || |||| |||| | |||||||| || Sbjct 1125596 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCGCCTCCGGGGTGGTAT 1125547 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||| |||||| | || || || ||||| || || Sbjct 1126004 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1125945 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||||| || |||||||||||||| || || ||||| Sbjct 1125944 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1125885 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || |||||||| | ||| | || || |||||| Sbjct 1125884 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1125825 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || || | || |||| |||| | |||||||| || Sbjct 1125824 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCGCCTCCGGGGTGGTAT 1125775 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||| |||||| | || || || ||||| || || Sbjct 1124636 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1124577 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||||| || |||||||||||||| || || ||||| Sbjct 1124576 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1124517 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || |||||||| | ||| | || || |||||| Sbjct 1124516 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1124457 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || || || || || | || ||||| | || | |||||||| Sbjct 1124456 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTACGCCTCCGGGGTGG 1124410 >seq10545 Length=227 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| |||||| | || || || || || ||||| Sbjct 1 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAACCCAGT 60 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| || || || |||||||||||||| || || || || Sbjct 61 GACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCAG 120 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | ||| | || || |||||| Sbjct 121 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 180 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||| ||| | ||| | || ||||| || | ||||| Sbjct 181 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGG 227 >seq8631 Length=204 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||| |||||| | || || || ||||| || || Sbjct 1 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 60 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||||| || |||||||||||||| || || ||||| Sbjct 61 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 120 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || |||||||| | ||| | || || |||||| Sbjct 121 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 180 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || || || || || Sbjct 181 ATCCAGAAAGAATCCAC 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434810192302080