Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq19887 105 6e-18 seq3917 100 2e-16 >seq19887 Length=6038298 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||| | || |||||||| ||||| | || || ||||| | ||| ||||| Sbjct 4354208 AGGCCTGTGACATGGGCAATCATATATGTGAGCAGTGAATAACTGGCGATATTGAAAGGC 4354267 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || || || ||||||||| | |||||||| ||||| ||||| || || || || ||| | Sbjct 4354268 ACCCCTAGTCCCATGTCTCCAGATCTCTGATACAACTGGCATGACAGTTCACCATTTAGA 4354327 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||||||||| | | | ||| |||||||||| | |||| Sbjct 4354328 ACATAAAACTGGCAAAGGGCGTGGCATGGAGGCAAAGCCAT 4354368 >seq3917 Length=1686678 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||| |||||||||||| | |||||||| | || || || |||||||| Sbjct 1395223 GTGGTGGAGGAGCTATTCCGAGATGGGATTAACTGGGGAAGGATCGTGGCCTTCTTTGAA 1395164 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 |||||||| || ||||||||||| || ||||| | | || | | || || |||| Sbjct 1395163 TTTGGTGGCGTGATGTGTGTGGAGAGTGTCAACCGGGAGATGTCGCCTCTTGTGGACAGT 1395104 Query 3365 ATTGCCGCGTGGATGACAGA 3384 ||||| | ||||||||| || Sbjct 1395103 ATTGCTGTGTGGATGACTGA 1395084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414376256217856