Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq19881 179 9e-40 seq10545 179 9e-40 seq7604 140 8e-28 seq8631 125 2e-23 >seq19881 Length=10700766 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 10193475 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 10193534 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| || | ||||| |||||| Sbjct 10193535 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCC 10193594 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||||||| || ||||||||| | ||||||||| || ||||| ||| Sbjct 10193595 TGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTC 10193654 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 10193655 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10193686 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 10194728 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 10194787 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| || | ||||| |||||| Sbjct 10194788 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCC 10194847 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||||||| || ||||||||| | ||||||||| || ||||| ||| Sbjct 10194848 TGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTC 10194907 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 10194908 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194939 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 10194044 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 10194103 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| || | ||||| |||||| Sbjct 10194104 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCC 10194163 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||| || || ||||||||| | || ||||| || ||||| ||| Sbjct 10194164 TGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTC 10194223 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 10194224 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194255 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 10194272 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 10194331 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| || | ||||| |||||| Sbjct 10194332 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCC 10194391 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||| || || ||||||||| | || ||||| || ||||| ||| Sbjct 10194392 TGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTC 10194451 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 10194452 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194483 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 10194500 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 10194559 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| || | ||||| |||||| Sbjct 10194560 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCC 10194619 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||| || || ||||||||| | || ||||| || ||||| ||| Sbjct 10194620 TGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTC 10194679 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 10194680 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194711 >seq10545 Length=227 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 212 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 153 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| || | ||||| |||||| Sbjct 152 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCC 93 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||||||| || ||||||||| | ||||||||| || ||||| ||| Sbjct 92 TGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTC 33 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 32 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1 >seq7604 Length=1415154 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| |||||||| ||||| |||||||| || || | ||||| | || ||| Sbjct 1125793 AGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCT 1125852 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| | | || || || ||||||| ||||| |||||| Sbjct 1125853 TCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCC 1125912 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || || || || ||||||||| | || || || || ||||| ||| Sbjct 1125913 TGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTC 1125972 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || | || || ||||| | ||||||||| Sbjct 1125973 TTGCCTGTCAAGGTTTTCACAAAGATCTGCATTTT 1126007 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| |||||||| ||||| |||||||| || || | ||||| | || ||| Sbjct 1124653 AGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCT 1124712 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| | | || || || ||||||| ||||| |||||| Sbjct 1124713 TCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCC 1124772 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || || || || ||||||||| | || || || || ||||| ||| Sbjct 1124773 TGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTC 1124832 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | || || ||||| | |||||| Sbjct 1124833 TTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1124864 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| |||||||| ||||| |||||||| || || | ||||| | || ||| Sbjct 1124881 AGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCT 1124940 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| | | || || || ||||||| ||||| |||||| Sbjct 1124941 TCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCC 1125000 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || || || || ||||||||| | || || || || ||||| ||| Sbjct 1125001 TGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTC 1125060 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | || || ||||| | |||||| Sbjct 1125061 TTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125092 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| |||||||| ||||| |||||||| || || | ||||| | || ||| Sbjct 1125109 AGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCT 1125168 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| | | || || || ||||||| ||||| |||||| Sbjct 1125169 TCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCC 1125228 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || || || || ||||||||| | || || || || ||||| ||| Sbjct 1125229 TGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTC 1125288 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | || || ||||| | |||||| Sbjct 1125289 TTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125320 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| |||||||| ||||| |||||||| || || | ||||| | || ||| Sbjct 1125337 AGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCT 1125396 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| | | || || || ||||||| ||||| |||||| Sbjct 1125397 TCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCC 1125456 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || || || || ||||||||| | || || || || ||||| ||| Sbjct 1125457 TGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTC 1125516 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | || || ||||| | |||||| Sbjct 1125517 TTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125548 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| |||||||| ||||| |||||||| || || | ||||| | || ||| Sbjct 1125565 AGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCT 1125624 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| | | || || || ||||||| ||||| |||||| Sbjct 1125625 TCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCC 1125684 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || || || || ||||||||| | || || || || ||||| ||| Sbjct 1125685 TGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTC 1125744 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | || || ||||| | |||||| Sbjct 1125745 TTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125776 Score = 132 bits (146), Expect = 1e-25 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || | |||||| | ||| |||||||| ||||| |||||||| || || | ||||| Sbjct 1124416 CGGAGGCGTAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTG 1124475 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || |||||||||||||| || || ||||| | | || || || ||||||| ||| Sbjct 1124476 CGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCT 1124535 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||||||||| || || || || || ||||||||| | || || || || Sbjct 1124536 TCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGG 1124595 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || | || || ||||| | |||||| Sbjct 1124596 GTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1124636 >seq8631 Length=204 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| |||||||| ||||| |||||||| || || | ||||| | || ||||||||||| Sbjct 204 GTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTG 145 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | | || || || ||||||| ||||| ||||||||||| || Sbjct 144 CTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTT 85 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || || || ||||||||| | || || || || ||||| ||||| || || Sbjct 84 GGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGT 25 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | || || ||||| | |||||| Sbjct 24 CAAGGTTTTCACAAAGATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158856393056960