Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq7604 147 5e-30 seq8631 129 1e-24 seq19904 122 2e-22 seq7147 120 7e-22 seq16388 105 2e-17 >seq7604 Length=1415154 Score = 147 bits (162), Expect = 5e-30 Identities = 167/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| ||||| |||||||||||||| |||| ||||| || | || || Sbjct 1125784 CGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTG 1125843 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||| ||||| |||||||||||||| ||||| | | || || || || ||||| ||| Sbjct 1125844 CGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCT 1125903 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||| ||||| || ||| ||| || |||||||| || || || |||| Sbjct 1125904 TCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGG 1125963 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||||||| ||||| ||||| | || | |||||||| Sbjct 1125964 GTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCATTTT 1126007 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| ||||| |||||||||||||| |||| ||||| || | || || Sbjct 1124644 CGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTG 1124703 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||| ||||| |||||||||||||| ||||| | | || || || || ||||| ||| Sbjct 1124704 CGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCT 1124763 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||| ||||| || ||| ||| || |||||||| || || || |||| Sbjct 1124764 TCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGG 1124823 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| ||||| ||||| Sbjct 1124824 GTGATGGTCTTGCCTGTCAAGGTTTT 1124849 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| ||||| |||||||||||||| |||| ||||| || | || || Sbjct 1124872 CGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTG 1124931 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||| ||||| |||||||||||||| ||||| | | || || || || ||||| ||| Sbjct 1124932 CGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCT 1124991 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||| ||||| || ||| ||| || |||||||| || || || |||| Sbjct 1124992 TCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGG 1125051 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| ||||| ||||| Sbjct 1125052 GTGATGGTCTTGCCTGTCAAGGTTTT 1125077 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| ||||| |||||||||||||| |||| ||||| || | || || Sbjct 1125100 CGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTG 1125159 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||| ||||| |||||||||||||| ||||| | | || || || || ||||| ||| Sbjct 1125160 CGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCT 1125219 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||| ||||| || ||| ||| || |||||||| || || || |||| Sbjct 1125220 TCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGG 1125279 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| ||||| ||||| Sbjct 1125280 GTGATGGTCTTGCCTGTCAAGGTTTT 1125305 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| ||||| |||||||||||||| |||| ||||| || | || || Sbjct 1125328 CGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTG 1125387 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||| ||||| |||||||||||||| ||||| | | || || || || ||||| ||| Sbjct 1125388 CGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCT 1125447 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||| ||||| || ||| ||| || |||||||| || || || |||| Sbjct 1125448 TCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGG 1125507 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| ||||| ||||| Sbjct 1125508 GTGATGGTCTTGCCTGTCAAGGTTTT 1125533 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| ||||| |||||||||||||| |||| ||||| || | || || Sbjct 1125556 CGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTG 1125615 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||| ||||| |||||||||||||| ||||| | | || || || || ||||| ||| Sbjct 1125616 CGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCT 1125675 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||| ||||| || ||| ||| || |||||||| || || || |||| Sbjct 1125676 TCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGG 1125735 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| ||||| ||||| Sbjct 1125736 GTGATGGTCTTGCCTGTCAAGGTTTT 1125761 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| |||||||||||||| |||| ||||| || | || || | ||| ||| Sbjct 1124425 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCT 1124484 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||||||||| ||||| | | || || || || ||||| ||||| ||||| Sbjct 1124485 TCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCC 1124544 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||| ||| || |||||||| || || || |||| ||||| ||| Sbjct 1124545 TGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTC 1124604 Query 225682 TTGCCCGTCAAAGTTTT 225698 ||||| ||||| ||||| Sbjct 1124605 TTGCCTGTCAAGGTTTT 1124621 >seq8631 Length=204 Score = 129 bits (142), Expect = 1e-24 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| |||||||||||||| |||| ||||| || | || || | ||| ||||| ||||| Sbjct 204 GTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTG 145 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||||||||| ||||| | | || || || || ||||| ||||| ||||| ||||| || Sbjct 144 CTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTT 85 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| || |||||||| || || || |||| ||||| |||||||| || Sbjct 84 GGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGT 25 Query 225690 CAAAGTTTT 225698 ||| ||||| Sbjct 24 CAAGGTTTT 16 >seq19904 Length=17364 Score = 122 bits (134), Expect = 2e-22 Identities = 129/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 7556 TTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGG 7615 |||| || || ||| |||| || ||||| ||||||||||| |||||| | || || || | Sbjct 5567 TTTATAATGTAATTGTTACAGCACATGCTTTTGTTATGATCTTCTTTATAGTCATACCTG 5626 Query 7616 TTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGG 7675 | || || || || ||||| || ||| | || || ||||| ||||| || || || || | Sbjct 5627 TAATAATTGGGGGGTTCGGTAACTGACTTGTACCCTTAATAATTGGAGCCCCAGACATAG 5686 Query 7676 CTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 | || ||| | | || ||||||||||||||| ||||||| || || ||| Sbjct 5687 CATTCCCACGAATAAATAATATAAGTTTTTGACTACTACCCCCCTCATTA 5736 Score = 102 bits (112), Expect = 2e-16 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || ||||| || |||||||||||||||||||| ||||||||||| ||||| || || Sbjct 6138 TTCTGGGTGACCGAAGAATCAGAATAAATGTTGATATAGGATAGGATCTCCTCCTCCAGA 6079 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTC 370760 |||||||||||| ||||||| | |||| Sbjct 6078 AGGATCAAAAAAGGTAGTATTCAGGTTTC 6050 >seq7147 Length=115664 Score = 120 bits (132), Expect = 7e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| | ||||| || ||| | || || ||||| ||||||||||| |||||| | || || Sbjct 64507 CCAAATCTACAATGTAATTGTCACAGCACATGCTTTTGTTATGATCTTCTTTATAGTCAT 64448 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || | || || || |||||||| || ||| | || || |||| ||||| || || || Sbjct 64447 ACCTATAATAATCGGAGGTTTCGGTAACTGACTTGTGCCCCTAATAATTGGAGCCCCAGA 64388 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 ||| || || ||| | | || || |||||||||||| ||||||| || || ||| | || Sbjct 64387 TATAGCATTCCCACGAATAAATAACATAAGTTTTTGACTACTACCTCCCTCTTTACTACT 64328 Query 7731 A 7731 | Sbjct 64327 A 64327 Score = 87.8 bits (96), Expect = 4e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || || ||||||||||||||||| |||||||| | || ||| || ||||| ||||| Sbjct 63934 TTCTGGGTGGCCAAAAAATCAGAATAAGTGTTGATATAAGACAGGGTCTCCTCCTCCTGA 63993 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGT 370767 || ||||| ||| | ||||| | |||| |||||| Sbjct 63994 GGGGTCAAAGAAGGTTGTATTTAGGTTTCAATCAGT 64029 >seq16388 Length=412 Score = 105 bits (116), Expect = 2e-17 Identities = 81/96 (84%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || ||||| || |||||||||||||||||||| ||||||||||| ||||| || || Sbjct 211 TTCTGGGTGACCGAAGAATCAGAATAAATGTTGATATAGGATAGGATCTCCTCCCCCAGA 152 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGT 370767 |||||||||||| ||||||| | |||| ||| || Sbjct 151 AGGATCAAAAAAGGTAGTATTCAGGTTTCGATCTGT 116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192227080693376