Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq4256 116 3e-21 seq3895 100 2e-16 >seq4256 Length=2845976 Score = 116 bits (128), Expect = 3e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||| || || |||||||||||||| || | ||| |||||||| |||||||| || Sbjct 147939 TCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTCTTCTTC 147998 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 | |||||| |||| ||||| || ||||| ||||| || ||||| || || ||||| ||| Sbjct 147999 AACCAAAAGATAGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAGCT 148058 Query 4692 ACTA 4695 |||| Sbjct 148059 ACTA 148062 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4808 TGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867 ||| |||| ||| ||||||||||| || || || |||||||| |||||||||||||| || Sbjct 150530 TGGATCTTTAATGTAAGTGTCTATGAGCAGACTGTACATTTCTGAATGTATATTTTCCAT 150589 Query 4868 AGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCT 4927 ||||||||| || || || || | | |||||| |||| || ||||| | | |||| Sbjct 150590 AGCAATCTGGAAGCCATAGAAAAAGCGAGCTTCAGTTATCTGTACTTCTTGGCTGAATCG 150649 Query 4928 TTCTAC 4933 ||| || Sbjct 150650 TTCCAC 150655 >seq3895 Length=4157194 Score = 100 bits (110), Expect = 2e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| || ||||| ||||| || || ||||||||||||||||| |||| |||||||| || Sbjct 2188658 TACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAAGCCAGGACATGAGAGAT 2188599 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 ||||| | ||| || | || || || |||||||| || || || || | ||||||||| Sbjct 2188598 GAAGTATTTTTCTTCTGATTTCAGCTTGTTCCAGTGAGGAAAGTCCTTCGATAAATCAAC 2188539 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || |||| ||||| ||||| || || || || | ||| ||||| | ||| ||||| || Sbjct 2197309 TCATCTCGACTAATGAGTTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCTTC 2197250 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||||||||| ||||| || || || ||||| || ||||| || || ||||| || Sbjct 2197249 AGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATTCCTTCCACTGCAGCAAAGGCA 2197190 Query 4692 AC 4693 || Sbjct 2197189 AC 2197188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426946006308032