Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3620 123 3e-23 seq4256 100 4e-16 seq3895 89.7 7e-13 >seq3620 Length=164711 Score = 123 bits (136), Expect = 3e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || |||||||||||||| || |||||| ||| | || || || ||||| || | Sbjct 102991 TCCACCCATAGAAATGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCAATATGGATGT 103050 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| ||||| || |||||||||||||| ||||| ||||| |||||||| | ||||||| Sbjct 103051 TCAAGGACTGGCTCTGATCGATGAAAGCGCCTCTGTCAGCTGCCATTTTGAGGATGGTCT 103110 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || | |||||||| | || || | | || || | |||||||||| Sbjct 103111 TCTGGGAGATTTCCCAGACTGTCTTATAGAGCTGCTTCAAGTCATCTGGAA 103161 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||||||||| |||||||| || || || || || ||| Sbjct 114434 GTGCCAGCATTGAAGAGGGTGGGAGATGCATGGGTAAACCACTTCTCCGACAGGAGGTTG 114493 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||||||| || | |||||||| || || ||||| || | ||| | ||||| | Sbjct 114494 TATGTTTCAATTGCAGCATCTATGTCGTTTTTGTGGATTCCCACAGATACCCTCATCAGC 114553 Query 78519 ATATGCTGAGGTCTTTCA 78536 || || || || | |||| Sbjct 114554 ATGTGTTGGGGGCGTTCA 114571 Score = 89.7 bits (98), Expect = 7e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| ||||| || | ||||| || ||||| || |||||||| || || || | || Sbjct 104697 TGAAACTCTCCTGAAAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCAATGGAC 104756 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGG 77230 || || || ||||| || ||||||||||||||||||||||| || Sbjct 104757 TCGTTATTCCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATTGG 104800 >seq4256 Length=2845976 Score = 100 bits (110), Expect = 4e-16 Identities = 115/153 (75%), Gaps = 4/153 (3%) Strand=Plus/Plus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTC---TTGAGACATAACTCC 47845 |||| |||||||||| |||| | || ||| |||||| || ||||| ||||| Sbjct 146402 GTTCATTTAAAAGTCTGCATCCAGAGTGAAAGAGTTATCTGTGGGTTTTGACATTACTCC 146461 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| || || ||||| || || || ||||| || || ||||| || ||||||| ||| || Sbjct 146462 CATCTTCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAGAT 146521 Query 47906 ATTTTCCATAAAATCAAATGGATTAACTGCATT 47938 ||| ||||| || ||||||||||| |||| || Sbjct 146522 ATTCTCCATGAAGTCAAATGGATTCTCTGCTTT 146554 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||||| || | |||||||||||| ||||| || ||||||| ||| | || || Sbjct 147939 TCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTCTTCTTC 147998 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 | |||||| || | || || || ||||| ||||| || ||||| || || ||||| || Sbjct 147999 AACCAAAAGATAGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAGC 148057 >seq3895 Length=4157194 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||| |||||| | ||| || || ||||| || || ||||| || || | || || Sbjct 2197309 TCATCTCGACTAATGAGTTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCTTC 2197250 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||||||||| || || ||||| || || ||||| || ||||| || || ||||| || Sbjct 2197249 AGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATTCCTTCCACTGCAGCAAAGGC 2197191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694495966402560