Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3620 123 4e-23 seq3895 107 3e-18 seq4256 104 3e-17 >seq3620 Length=164711 Score = 123 bits (136), Expect = 4e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || |||||||||||||| || |||||| ||| | || || || ||||| || | Sbjct 102991 TCCACCCATAGAAATGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCAATATGGATGT 103050 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| ||||| || |||||||||||||| ||||| ||||| |||||||| | ||||||| Sbjct 103051 TCAAGGACTGGCTCTGATCGATGAAAGCGCCTCTGTCAGCTGCCATTTTGAGGATGGTCT 103110 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | || | |||||||| | || || | | || || | |||||||||| Sbjct 103111 TCTGGGAGATTTCCCAGACTGTCTTATAGAGCTGCTTCAAGTCATCTGGAA 103161 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAA 76018 || ||||| || | ||| | || || || |||||||| || | || || ||||||||| Sbjct 106136 TAAGTTTCATATGGCCCATACTCTTTCGCAAGTTCGCAGCTGGATTCCAAAGCACCGTAA 106195 Query 76019 TAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAA 76078 ||||| || || ||||||| || || || || || || | || ||||| || || Sbjct 106196 TAAATGGTCTCAAAAATCTGCTGGTTCAGCAACTGGGCCTCGGGGCTTTCAAAGGGGTAT 106255 Query 76079 TGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTC 76138 | || || || |||||||| || || || || ||||| ||||| || | ||| | Sbjct 106256 CTCATCAGGATGAACGCATCTGCCAGACCTTGCACCCCAATGCCAATGGGGCGATGGCGT 106315 Query 76139 TTATTGGAAATTTCAGC 76155 || ||||| || || || Sbjct 106316 TTGTTGGAGATCTCGGC 106332 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || ||||||||||| || ||||| || || || || || ||| Sbjct 114434 GTGCCAGCATTGAAGAGGGTGGGAGATGCATGGGTAAACCACTTCTCCGACAGGAGGTTG 114493 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||||||| | || ||||| || || || ||||| |||| || | ||||| | Sbjct 114494 TATGTTTCAATTGCAGCATCTATGTCGTTTTTGTGGATTCCCACAGATACCCTCATCAGC 114553 Query 77114 ATATGCTGAGGTCGTTC 77130 || || || || ||||| Sbjct 114554 ATGTGTTGGGGGCGTTC 114570 >seq3895 Length=4157194 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||| |||||| | ||| || || ||||| || |||||||| || || | ||| || Sbjct 2197309 TCATCTCGACTAATGAGTTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCTTC 2197250 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||||||||| || ||||| || || ||||| || ||||| || || || || || Sbjct 2197249 AGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATTCCTTCCACTGCAGCAAAGGCA 2197190 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 2197189 ACCACTCTCTCCCC 2197176 >seq4256 Length=2845976 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | |||||||||||| ||||| |||||||||| ||| | ||| || Sbjct 147939 TCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTCTTCTTC 147998 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | |||||| |||| || || || ||||| ||||| || ||||| || || || || || Sbjct 147999 AACCAAAAGATAGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAGCT 148058 Query 46774 AC 46775 || Sbjct 148059 AC 148060 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| || || ||||| | ||||| |||||||||||||| || ||||| ||||| Sbjct 150533 ATCTTTAATGTAAGTGTCTATGAGCAGACTGTACATTTCTGAATGTATATTTTCCATAGC 150592 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 ||||| || || || ||| | | |||||||| |||||||| ||| | |||||||| Sbjct 150593 AATCTGGAAGCCATAGAAAAAGCGAGCTTCAGTTATCTGTACTTCTTGGCTGAATCGTTC 150652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712757021921280