Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq4256 89.7 5e-13 seq3273 84.2 2e-11 >seq4256 Length=2845976 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| ||||| || | ||| |||||||| || | ||| ||||||||||||| || || Sbjct 147939 TCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTCTTCTTC 147998 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | |||||| || | ||||| || || || ||||| || || || || || ||||| || Sbjct 147999 AACCAAAAGATAGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAGCT 148058 Query 23653 ACAAGACGT 23661 || | |||| Sbjct 148059 ACTACACGT 148067 >seq3273 Length=3379311 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 8537 GAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGC 8596 |||||||||| |||| | ||||| || ||||| ||||||||| ||| ||||||||||| Sbjct 3147102 GAACTCCTGAGCTCAAGCGATCCGCCGGCCTCAGCCTCCCAAGTAGCTAGGATTACAGGC 3147043 Query 8597 ATGAGCCACCGCGCCTGGC 8615 || ||||||||||| ||| Sbjct 3147042 GTGCGCCACCGCGCCCGGC 3147024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521358253785600