Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq3731 141 1e-28 seq382 116 5e-21 >seq3731 Length=1951935 Score = 141 bits (156), Expect = 1e-28 Identities = 203/286 (71%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||||| | ||||||||| ||| || || ||| | | || |||| |||||| Sbjct 227112 AAGGGACACCGCCTGACGTTGCGACACACCAGCTTCTGGAGCGACGCCGTCTTTACGATC 227053 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 |||| || | | |||||||| ||||||||||||||||| |||||||||| ||| | Sbjct 227052 TCGAAGCCAGCCGCGCCGCCGAACGTGCTGGGCTTCCAGTATTCCGGGGAGCAAATGGGG 226993 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || | | || ||||| |||||||| || || ||| ||| | |||||||| || || Sbjct 226992 TTTCCGAACAGCCCTTTCAGGGAGAAGGGGGCTCCCGTCTCCACCATGCTCTCCCCAAAC 226933 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 || | ||| || ||||||| |||| || || || | ||| | ||||| || | | | Sbjct 226932 ATAGAGTTCGGCTGGGGCTTCTCCAGCAGCAAGCCCGGGTAAAACTCCAGGGCATTAATG 226873 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 ||||| || || | || | || || |||||| |||||||| Sbjct 226872 TCTCCATAGAGCTCTTCCAGCGCCGCTGCCTTCTCCTCTTCTCCTG 226827 >seq382 Length=2585615 Score = 116 bits (128), Expect = 5e-21 Identities = 169/238 (71%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| | ||| || |||||||| |||||||||||| || || || || | || Sbjct 1947275 AAGCCCACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTGAGGAGAACAAATAGCATTT 1947216 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||| |||||||| | ||||| || || || | || | ||| ||||||| || ||| Sbjct 1947215 CCCATAAGGCCTTTCAAAGAGAATGGTGCGCCAAGTTCCACCATGGTCTCACCAAAAATG 1947156 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 || ||||| ||| | || || | | || | ||||||||||| ||| || | |||| Sbjct 1947155 GCACCAGGACGAGGCCTCTCTACTAGAAGGCCAGGGTACAGCTCCATAGCATCAATGTCT 1947096 Query 8543 CCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT--TTTATTAATAAA 8598 || ||||| | | ||| || || || || ||||||||||| | ||||||||| Sbjct 1947095 CCATAAAGCTCTTCTAATTCAGCTGCCATTTCTTTTTCTCCTGTAATAAATTAATAAA 1947038 Score = 86.0 bits (94), Expect = 9e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTC-GCGCCAAATCAGTCCTAAA 9708 ||||||||||| || || |||| |||||||| || |||| ||| | || ||| |||| Sbjct 1943152 CTTACCCCATGGCCAAGAGCTTTGGTGAAGGCTGGCCCTCTGCGGTGA-TCTGTCTTAAA 1943094 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||||||| ||||||||||| ||||||| | ||||| | || | ||| || || || Sbjct 1943093 GTACTGGTGGGTGAAATGTTGAGCAAAAAACGTGAACATAACATTTGAGCCTTGTGGGTC 1943034 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 |||| | || | | || ||| ||| |||||||| || | ||| || |||| Sbjct 1943033 GGGAATAAATTTTTGTCTCAGCAGAAATTTCTCCACAACCATTGTGGAATCTGGGAGCTC 1942974 Query 9829 TGTTTTACCTG 9839 | ||||||| Sbjct 1942973 CTTCTTACCTG 1942963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716698441052160