Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq19881 143 6e-29 seq10545 143 6e-29 seq7604 123 6e-23 seq8631 120 7e-22 seq6590 104 6e-17 >seq19881 Length=10700766 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || |||||||| ||||| ||| | ||| Sbjct 10193683 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAACCCAGTGAC 10193624 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| ||| ||||| |||||||||||||| ||||| || |||||||| Sbjct 10193623 ACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCAGCAG 10193564 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || || ||||| |||||||| | || || | || || ||| || Sbjct 10193563 AGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATC 10193504 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || |||||||| || | || ||| Sbjct 10193503 CAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGA 10193465 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || |||||||| ||||| ||| | ||| Sbjct 10194936 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAACCCAGTGAC 10194877 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| ||| ||||| |||||||||||||| ||||| || |||||||| Sbjct 10194876 ACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCAGCAG 10194817 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || || ||||| |||||||| | || || | || || ||| || Sbjct 10194816 AGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATC 10194757 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || |||||||| || | || ||| Sbjct 10194756 CAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGA 10194718 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| |||||||| || ||| Sbjct 10194252 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTGGA--GCCCAGTG 10194195 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || ||| ||||| |||||||||||||| ||||| || ||||||| Sbjct 10194194 ACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCAGC 10194135 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 10194134 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 10194075 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || || |||||||| || | || ||| Sbjct 10194074 TCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGA 10194034 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| |||||||| || ||| Sbjct 10194480 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTGGA--GCCCAGTG 10194423 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || ||| ||||| |||||||||||||| ||||| || ||||||| Sbjct 10194422 ACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCAGC 10194363 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 10194362 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 10194303 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || || |||||||| || | || ||| Sbjct 10194302 TCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGA 10194262 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| |||||||| || ||| Sbjct 10194708 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTGGA--GCCCAGTG 10194651 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || ||| ||||| |||||||||||||| ||||| || ||||||| Sbjct 10194650 ACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCAGC 10194591 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 10194590 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 10194531 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || || |||||||| || | || ||| Sbjct 10194530 TCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGA 10194490 >seq10545 Length=227 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || |||||||| ||||| ||| | ||| Sbjct 4 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAACCCAGTGAC 63 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| ||| ||||| |||||||||||||| ||||| || |||||||| Sbjct 64 ACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCAGCAG 123 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || || ||||| |||||||| | || || | || || ||| || Sbjct 124 AGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATC 183 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || |||||||| || | || ||| Sbjct 184 CAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGA 222 >seq7604 Length=1415154 Score = 123 bits (136), Expect = 6e-23 Identities = 159/217 (73%), Gaps = 7/217 (3%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || |||||||| | ||||| || || |||||||| || || || Sbjct 1126007 AAAATGC---AGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGA- 1125952 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| ||||||| ||||| ||||| || || |||||||||||||| || |||| Sbjct 1125951 -GCCCAGTGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTC 1125893 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | || ||||| | | ||||| || || || ||||| ||||| || | || || | | Sbjct 1125892 CAGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAG 1125833 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || ||| |||| |||||||| || ||||| || || Sbjct 1125832 ACTACAACATCCAGAAAGAATCCACTCTGCACCTGGT 1125796 Score = 122 bits (134), Expect = 2e-22 Identities = 153/207 (74%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| | ||||| || || |||||||| || || || || ||| Sbjct 1124633 CAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGA--GCCCAGTG 1124576 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| || || |||||||||||||| || ||||| || |||| Sbjct 1124575 ACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAGC 1124516 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || || ||||| ||||| || | || || | || || ||| Sbjct 1124515 AGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAACA 1124456 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| |||||||| || ||||| |||| Sbjct 1124455 TCCAGAAAGAATCCACTCTGCA-CTTG 1124430 Score = 122 bits (134), Expect = 2e-22 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| | ||||| || || |||||||| || || || || ||| Sbjct 1124861 CAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGA--GCCCAGTG 1124804 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| || || |||||||||||||| || ||||| || |||| Sbjct 1124803 ACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAGC 1124744 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || || ||||| ||||| || | || || | || || ||| Sbjct 1124743 AGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAACA 1124684 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || ||||| || || Sbjct 1124683 TCCAGAAAGAATCCACTCTGCACCTGGT 1124656 Score = 122 bits (134), Expect = 2e-22 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| | ||||| || || |||||||| || || || || ||| Sbjct 1125089 CAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGA--GCCCAGTG 1125032 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| || || |||||||||||||| || ||||| || |||| Sbjct 1125031 ACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAGC 1124972 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || || ||||| ||||| || | || || | || || ||| Sbjct 1124971 AGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAACA 1124912 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || ||||| || || Sbjct 1124911 TCCAGAAAGAATCCACTCTGCACCTGGT 1124884 Score = 122 bits (134), Expect = 2e-22 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| | ||||| || || |||||||| || || || || ||| Sbjct 1125317 CAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGA--GCCCAGTG 1125260 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| || || |||||||||||||| || ||||| || |||| Sbjct 1125259 ACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAGC 1125200 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || || ||||| ||||| || | || || | || || ||| Sbjct 1125199 AGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAACA 1125140 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || ||||| || || Sbjct 1125139 TCCAGAAAGAATCCACTCTGCACCTGGT 1125112 Score = 122 bits (134), Expect = 2e-22 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| | ||||| || || |||||||| || || || || ||| Sbjct 1125545 CAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGA--GCCCAGTG 1125488 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| || || |||||||||||||| || ||||| || |||| Sbjct 1125487 ACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAGC 1125428 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || || ||||| ||||| || | || || | || || ||| Sbjct 1125427 AGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAACA 1125368 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || ||||| || || Sbjct 1125367 TCCAGAAAGAATCCACTCTGCACCTGGT 1125340 Score = 122 bits (134), Expect = 2e-22 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| | ||||| || || |||||||| || || || || ||| Sbjct 1125773 CAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGA--GCCCAGTG 1125716 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| || || |||||||||||||| || ||||| || |||| Sbjct 1125715 ACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAGC 1125656 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || || ||||| ||||| || | || || | || || ||| Sbjct 1125655 AGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAACA 1125596 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || ||||| || || Sbjct 1125595 TCCAGAAAGAATCCACTCTGCACCTGGT 1125568 >seq8631 Length=204 Score = 120 bits (132), Expect = 7e-22 Identities = 149/202 (74%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| | ||||| || || |||||||| || || || || ||| Sbjct 4 CAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGA--GCCCAGTG 61 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| || || |||||||||||||| || ||||| || |||| Sbjct 62 ACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAGC 121 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || || ||||| ||||| || | || || | || || ||| Sbjct 122 AGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAACA 181 Query 178102 TCCAAAAAGAATCAACACTGCA 178123 |||| |||||||| || ||||| Sbjct 182 TCCAGAAAGAATCCACTCTGCA 203 >seq6590 Length=2399769 Score = 104 bits (114), Expect = 6e-17 Identities = 86/103 (83%), Gaps = 4/103 (4%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||||||||| || || || ||||| ||||||||||||||||| || ||| Sbjct 1991505 CAGATCTTCGTGAAAACCCTGACGGGCAAAACCATCACCCTCGAGGTGGA--GCCCAGCG 1991448 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||||||||||||||| |||||||||||||| ||||| Sbjct 1991447 ACACCATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAAGG 1991405 Score = 104 bits (114), Expect = 6e-17 Identities = 86/103 (83%), Gaps = 4/103 (4%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||||||||| || || || ||||| ||||||||||||||||| || ||| Sbjct 1991705 CAGATCTTCGTGAAAACCCTGACGGGCAAAACCATCACCCTCGAGGTGGA--GCCCAGCG 1991648 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||||||||||||||| |||||||||||||| ||||| Sbjct 1991647 ACACCATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAAGG 1991605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203424224469376