Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq208 96.9 4e-15 seq1165 86.0 6e-12 >seq208 Length=2424200 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||||||||| ||||| || ||||| || | ||| ||||| ||||| |||| Sbjct 1738292 CCTCATCTCTGCTGATCAGTTCATTGGAAAAAGTAAGCCCAGGCATTAACCCTCGCTTCT 1738233 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | |||||| || | || || || || ||||||||||| || || || | ||| || | Sbjct 1738232 TCAGCCAAAAGATAGACGCAAAAGAACCGGAAAAGAATATTCCTTCCACAGCTGCGAAGG 1738173 Query 17106 CGATTAATCGTTC 17118 ||| || |||||| Sbjct 1738172 CGACTACTCGTTC 1738160 >seq1165 Length=160614 Score = 86.0 bits (94), Expect = 6e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATACAG 119920 ||||| || || ||||| ||| | ||||| | ||||| ||||| | ||| || | | Sbjct 35249 CCCACATAGCCATTGGGGTCCCTCCCATCCAGTTCGTAACGGTCGTTGAGGTAAATGCTG 35308 Query 119921 ACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACATA 119980 | | | || ||| |||| | | |||| ||||| || || |||||||||||||| Sbjct 35309 AATTTCAGGGCTTCTTCTGGAGAATTGGTCCACTCCAGGATCTTCTTAGCCCAGTACATC 35368 Query 119981 CGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGC 120027 || | | | |||||||| || |||||| ||||||| || || || || Sbjct 35369 CGCAGGAAGCCATGCATCTTCCCTTCATGAACCATCTGGAGCTGAGC 35415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517456653319320