Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq49 102 1e-16 seq208 91.5 2e-13 seq148 84.2 3e-11 >seq49 Length=4988178 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| ||||| | ||| ||||| || || || || ||||| || || | ||| || Sbjct 468619 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGACCCGGCATCAGTCCTCTCTTCTTG 468678 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||||||||| | ||||| | ||||| |||||||||||||| || | ||||| ||| Sbjct 468679 AGCCAAAATATAGCTGCAAAAGCACCAGAGAAGAAAATTCCTTCAACCGAGGCAAAAGCA 468738 Query 24279 ATAAGTCTTTCTCC 24292 | ||||| ||||| Sbjct 468739 ACCAGTCTCTCTCC 468752 >seq208 Length=2424200 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 ||||| | |||||||||||| | | ||| |||||||| ||||| |||||||| ||||| Sbjct 1737130 TCTTTGATATATGTATCAATAAGTAAACTGTACATTTCTGAATGGATGTTTTCCATGGCG 1737071 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 || || || || |||||||| | ||| || || | ||| |||||| Sbjct 1737070 ATCTGGAAACCATAGAAACAGCGAGCTTCTGTCACCTGCACTTCT 1737026 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 || ||||| |||||||||| ||||||||||| || |||||||| | |||||| ||||| Sbjct 1732681 ACCTCTTCAGCTGTCCAAAAGGATGCCTCTGCTTTCTTATACATTTGCCAGATATCATGG 1732622 Query 24693 TATTGAATTGGAAAAATAACAAA 24715 || ||||| ||||| || ||||| Sbjct 1732621 TACTGAATGGGAAAGATGACAAA 1732599 >seq148 Length=2989754 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| |||| ||| || ||||| ||||| | || || || || ||||| || || || | Sbjct 2363381 CACTGAATACTTTCTTGGTTTCCTTGTGCAAGTTGGAGACTGCAATTCTGGCTGCCAGGA 2363322 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || | | || || || ||||| | ||||||| ||||||||||| Sbjct 2363321 TGGCATAGTCTGGGTACTTGGTGGTCAGCGTCGCTGCGGTCTCGGCTGCCAGAGTGTCCA 2363262 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||||| || || || || | || | || ||||| || ||||| Sbjct 2363261 GCTCTACTGTAGTGACGCCGCTGTAAAGACCCTGGATCACTTTCAT 2363216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593619561521520