Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq530 116 3e-21 seq102 116 3e-21 >seq530 Length=912484 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | ||||| || | || |||||||| ||||| Sbjct 249090 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 249031 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||||||| ||| | ||| || ||||| |||||| ||| Sbjct 249030 GCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTC 248971 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || |||| |||||| |||| ||| ||||||||||| || | || Sbjct 248970 ACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTC 248911 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 248910 TTCACAAAGATCTGCAT 248894 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | ||||| || | || |||||||| ||||| Sbjct 249318 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 249259 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||||||| ||| | ||| || ||||| |||||| ||| Sbjct 249258 GCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTC 249199 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || |||| |||||| |||| ||| ||||||||||| || | || Sbjct 249198 ACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTC 249139 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 249138 TTCACAAAGATCTGCAT 249122 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | ||||| || | || |||||||| ||||| Sbjct 249546 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 249487 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||||||| ||| | ||| || ||||| |||||| ||| Sbjct 249486 GCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTC 249427 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || |||| |||||| |||| ||| ||||||||||| || | || Sbjct 249426 ACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTC 249367 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 249366 TTCACAAAGATCTGCAT 249350 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | ||||| || | || |||||||| ||||| Sbjct 249774 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 249715 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||||||| ||| | ||| || ||||| |||||| ||| Sbjct 249714 GCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTC 249655 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || |||| |||||| |||| ||| ||||||||||| || | || Sbjct 249654 ACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTC 249595 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 249594 TTCACAAAGATCTGCAT 249578 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | ||||| || | || |||||||| ||||| Sbjct 250002 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 249943 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||||||| ||| | ||| || ||||| |||||| ||| Sbjct 249942 GCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTC 249883 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || |||| |||||| |||| ||| ||||||||||| || | || Sbjct 249882 ACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTC 249823 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 249822 TTCACAAAGATCTGCAT 249806 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | ||||| || | || |||||||| ||||| Sbjct 248634 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 248575 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||||||| ||| | ||| || ||||| |||||| || Sbjct 248574 GCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTG 248515 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | |||||| |||| ||| ||||||||||| || | || Sbjct 248514 ACGTTCTCAATGGTGTCGCTCGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTC 248455 Query 21159 TTGACAAATATTTGCATTTT 21178 || ||||| || |||||||| Sbjct 248454 TTCACAAAGATCTGCATTTT 248435 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | ||||| || | || |||||||| ||||| Sbjct 248862 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 248803 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||||||| ||| | ||| || ||||| |||||| || Sbjct 248802 GCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTG 248743 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || |||| |||||| |||| ||| ||||||||||| || | || Sbjct 248742 ACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTC 248683 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 248682 TTCACAAAGATCTGCAT 248666 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | ||||| || | || |||||||| ||||| Sbjct 250230 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 250171 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||||||| ||| | ||| || ||||| |||||| || Sbjct 250170 GCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTG 250111 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || |||| || ||| |||| ||| |||||||||||||| | || Sbjct 250110 ACGTTCTCAATGGTGTCACTCGGTTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 250051 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 250050 TTCACAAAGATCTGCAT 250034 >seq102 Length=3625303 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | ||||| || | || |||||||| ||||| Sbjct 3125665 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCATCTTCCAGCTGCTTGCCG 3125606 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| ||| | |||||||||||| ||| || || Sbjct 3125605 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTG 3125546 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || |||| |||||| |||| || |||||||||||||| || || Sbjct 3125545 ACATTTTCAATGGTGTCACTCGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAAGGTC 3125486 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 3125485 TTCACAAAGATCTGCAT 3125469 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | || || || | || |||||||| ||||| Sbjct 3125437 GTGGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTACGGCCATCTTCCAGCTGCTTGCCG 3125378 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||| || ||| | |||||||||||| ||| || || Sbjct 3125377 GCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTG 3125318 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || |||| |||||| |||| ||| ||||||||||| || | ||| Sbjct 3125317 ACATTCTCAATGGTGTCACTTGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTT 3125258 Query 21159 TTGACAAATATTTGCATTTTG 21179 || ||||| || ||||||||| Sbjct 3125257 TTCACAAAAATCTGCATTTTG 3125237 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | ||||| || | || || ||||| ||||| Sbjct 3125893 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCG 3125834 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| || | ||||||||||| ||| || || Sbjct 3125833 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATTTTAGCCTTG 3125774 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || |||| |||||| |||| ||| ||||||||||| || || || Sbjct 3125773 ACATTCTCAATGGTGTCACTCGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTC 3125714 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 3125713 TTCACAAAGATCTGCAT 3125697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422188443741284