Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq102 98.7 9e-16 seq530 96.9 3e-15 >seq102 Length=3625303 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| | || || ||| || ||||| Sbjct 3125444 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTACGGCCATCTTCCAGCTG 3125385 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || || |||| || | ||||||||| || || ||||| |||||||| ||||| Sbjct 3125384 CTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTTT 3125325 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | |||||| | ||| ||||| | ||| | || ||||| || Sbjct 3125324 AGCCTTGACATTCTCAATGGTGTCACTTGGCTCCACCTCCAAGGTGATGGTCTTGCCAGT 3125265 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| |||||||||||||| Sbjct 3125264 GAGGGTTTTCACAAAAATCTGCAT 3125241 >seq530 Length=912484 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| ||| | ||||| ||| || Sbjct 250242 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 250183 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||| || | |||||| || || || |||||||| ||||| Sbjct 250182 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGG 250123 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| | || ||||| | ||| | || ||| Sbjct 250122 ATCTTGGCCTTGACGTTCTCAATGGTGTCACTCGGTTCCACCTCCAGGGTGATGGTCTTG 250063 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 |||||||| || || ||||| ||||||||| || Sbjct 250062 CCGGTCAGGGTCTTCACAAAGATCTGCATGCCT 250030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433757704802308