Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq427 136 7e-27 >seq427 Length=1217992 Score = 136 bits (150), Expect = 7e-27 Identities = 135/172 (78%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 51885 GATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGT 51944 |||||| |||| ||||||| |||||| ||||| ||||| || || ||| ||||||| || Sbjct 60725 GATAGCTGGAGCTTTATGGTGGTACTACATATCAAAAGGAATCGAGTACCTGGATACAGT 60784 Query 51945 ATTTTTCATACTTAGGAAA-AAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATT 52003 ||||||||| |||| |||| |||||||| || | | ||||||||| || ||||| || | Sbjct 60785 ATTTTTCAT-CTTAAGAAAGAAATTTAACCAAATCACTTTTCTACATGTTTATCACCACT 60843 Query 52004 TTACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 || ||||||||| | | ||| | ||||| |||||| |||| || || || Sbjct 60844 ACACCATGTTTACTTTGTGGTGGGTTGGTATAAAATGGGTTGCAGGGGGACA 60895 Score = 102 bits (112), Expect = 2e-16 Identities = 110/144 (76%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 52189 CAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTTTCCA 52248 || ||||| ||| || | || || || || ||||| ||||| || |||||||| ||||| Sbjct 64122 CAATTCCACATAACTCTTGGTCACACCGCCATGTCTATTTATATTGATTGCCCCTTTCCT 64181 Query 52249 AAATGGATACAGT--GGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGGTA 52306 || ||||| || | ||| || ||| ||||| || | | |||||| | |||||||||| Sbjct 64182 AAGTGGATGCACTATGGT--GTCATTGTCTATGCTGTCACTTTCATTGTCCTGTTTGGTA 64239 Query 52307 ACTTCTATTTTAGAACATACAAGA 52330 ||||||| | | | |||||||||| Sbjct 64240 ACTTCTACTATCGGACATACAAGA 64263 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || |||||||||||||| | ||||| ||||| |||||| ||||||| | |||||||| Sbjct 62356 GCCTTTTTTGGAGCTCAAATTAATTCCTTTATACATGTTGTTATGTATATGTATTATGGA 62415 Query 52117 ATGGCCGCTTGTGGTCCTATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTATA 52176 | || || ||||| || | ||| ||||| || ||||||||||| || | || ||| Sbjct 62416 CTAGCTGCCTGTGGCCCAAAATTCCAGAAGTACCTTTGGTGGAAACGATACTTAACCATA 62475 Query 52177 ATGCAGTTGGTA 52188 ||||| ||||| Sbjct 62476 CTGCAGCTGGTA 62487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923038137089960