Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq548 98.7 1e-15 seq20 98.7 1e-15 seq604 96.9 4e-15 seq348 96.9 4e-15 seq102 95.1 1e-14 seq504 89.7 6e-13 seq33 86.0 7e-12 >seq548 Length=871607 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 291731 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 291672 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 291671 TATACTAACGAGGA 291658 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 325107 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 325048 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 325047 TATACTAACGAGGA 325034 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 322383 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 322324 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 322323 ATACTAACGAGGA 322311 >seq20 Length=6710416 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| | ||||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 454855 AAAACTGCTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 454914 Query 60117 TCACCACTATACTACCGAGGATTG 60140 | |||||||||||| |||||| || Sbjct 454915 TTACCACTATACTAACGAGGAGTG 454938 >seq604 Length=741506 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 467529 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 467470 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 467469 ATACTAACGAGGA 467457 >seq348 Length=1506948 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 644399 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 644458 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 644459 ATACTAACGAGGA 644471 >seq102 Length=3625303 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3120864 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 3120805 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 3120804 TACTAACGAGGA 3120793 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3122518 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 3122459 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 3122458 TACTAACGAGGA 3122447 >seq504 Length=990704 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC-TCACCAC 60123 ||||| || ||||||||||||||| ||||||||||||||||||||| |||| | |||| Sbjct 522043 TCTCCCCGTCAGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGTGATACTTTGCCAC 522102 Query 60124 TATACTACCGAGGA 60137 |||||||| ||||| Sbjct 522103 TATACTACTGAGGA 522116 >seq33 Length=5880253 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| |||||||||||||||||||| |||| |||||||| Sbjct 2497306 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGCGGATACGCACCACTA 2497365 Query 60126 TACTACCGAGGA 60137 ||||| ||| || Sbjct 2497366 TACTAACGAAGA 2497377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571719325997720