Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq49 116 3e-21 seq208 89.7 5e-13 >seq49 Length=4988178 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 16249 ATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCC 16308 ||||| | |||| || || || || | || || || || |||||||| ||||| ||||| Sbjct 468609 ATGCATTACTTCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGACCCGGCATCAGTCC 468668 Query 16309 TCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGC 16368 || || || | |||||||||||| ||||| | |||||| ||||| || |||||||| | Sbjct 468669 TCTCTTCTTGAGCCAAAATATAGCTGCAAAAGCACCAGAGAAGAAAATTCCTTCAACCGA 468728 Query 16369 GGCAAATGCAACCAATCGCTCACC 16392 |||||| ||||||| || ||| || Sbjct 468729 GGCAAAAGCAACCAGTCTCTCTCC 468752 Score = 104 bits (114), Expect = 2e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 15887 TAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTT 15946 || || ||| ||||| || |||||| |||| ||| | | | ||| |||| | | Sbjct 463357 TAGAAGTCAGCATCTAAAGTAAACACGATATCATTTGTTTCAGCCATCACTGCAAAACGT 463416 Query 15947 TGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCC 16006 ||||| || ||||||||| ||||||||||| ||||||||||| | |||||| || ||| Sbjct 463417 TGATACTCCGAAACTCTCTTCTCAAAGAAATTGGTTTTTCCTTCCAGTGAAATGTTCTCC 463476 Query 16007 ATAAAATCAAAAGGATTTTTTG 16028 || ||||||||||| |||| || Sbjct 463477 ATGAAATCAAAAGGGTTTTCTG 463498 >seq208 Length=2424200 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || ||||| ||||| || ||||||| ||||| || || Sbjct 1738290 TCATCTCTGCTGATCAGTTCATTGGAAAAAGTAAGCCCAGGCATTAACCCTCGCTTCTTC 1738231 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||| |||| ||||| ||||| ||||||||||| ||||| || || || || || Sbjct 1738230 AGCCAAAAGATAGACGCAAAAGAACCGGAAAAGAATATTCCTTCCACAGCTGCGAAGGCG 1738171 Query 16379 ACCAATCGCTCACC 16392 || | ||| || || Sbjct 1738170 ACTACTCGTTCTCC 1738157 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 ||||| ||||| || |||||||| |||||||||||||| || || ||||| || ||||| Sbjct 1737124 ATATATGTATCAATAAGTAAACTGTACATTTCTGAATGGATGTTTTCCATGGCGATCTGG 1737065 Query 16565 AAACCATAAAAGCATCTAGCTTC 16587 |||||||| || || | |||||| Sbjct 1737064 AAACCATAGAAACAGCGAGCTTC 1737042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462432511531400