Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq208 102 8e-17 seq49 84.2 2e-11 >seq208 Length=2424200 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| || || ||||| || ||||| || | || ||||| || ||||| || | Sbjct 1738292 CCTCATCTCTGCTGATCAGTTCATTGGAAAAAGTAAGCCCAGGCATTAACCCTCGCTTCT 1738233 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | |||||| || | || || || ||||||||||||||||| || || || || || | Sbjct 1738232 TCAGCCAAAAGATAGACGCAAAAGAACCGGAAAAGAATATTCCTTCCACAGCTGCGAAGG 1738173 Query 14346 CTATTAATCGTTCTCC 14361 | | || ||||||||| Sbjct 1738172 CGACTACTCGTTCTCC 1738157 Score = 100 bits (110), Expect = 3e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 || ||||||||||||||||| || |||||||| || || ||||||||||| || ||||| Sbjct 1737124 ATATATGTATCAATAAGTAAACTGTACATTTCTGAATGGATGTTTTCCATGGCGATCTGG 1737065 Query 14534 AAACCATAAAAACATCTAGCTTCTG 14558 |||||||| ||||| | |||||||| Sbjct 1737064 AAACCATAGAAACAGCGAGCTTCTG 1737040 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 13895 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13954 || || || || ||||| ||||| || | || | |||||||||||||||||||| Sbjct 1740927 TTGGACATCACTCCCATCCGCTGATACTCTCCCACACGCTTTTCAAAGAAGTTAGTTTTG 1740868 Query 13955 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATT 13992 || |||||||| ||||| ||||| || ||||||||||| Sbjct 1740867 CCCTCCAGTGAGATATTCTCCATGAAGTCAAATGGATT 1740830 >seq49 Length=4988178 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 14228 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 14287 |||||||| ||||||||||| || || || || | || ||||||| ||||| || || Sbjct 468619 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGACCCGGCATCAGTCCTCTCTTCTTG 468678 Query 14288 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14346 | ||||||||| || || || | || || ||||| ||||| ||||| | ||||| || Sbjct 468679 AGCCAAAATATAGCTGCAAAAGCACCAGAGAAGAAAATTCCTTCAACCGAGGCAAAAGC 468737 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 13854 ACTAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTT 13913 |||| || ||| ||||||| | ||| || |||| | | | | || || || | | Sbjct 463355 ACTAGAAGTCAGCATCTAAAGTAAACACGATATCATTTGTTTCAGCCATCACTGCAAAAC 463414 Query 13914 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13973 |||||| || |||||| || |||||||| || ||||| ||||||||||| || || | Sbjct 463415 GTTGATACTCCGAAACTCTCTTCTCAAAGAAATTGGTTTTTCCTTCCAGTGAAATGTTCT 463474 Query 13974 CCATAAAATCAAATGGATTT 13993 |||| |||||||| || ||| Sbjct 463475 CCATGAAATCAAAAGGGTTT 463494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482262702879320