Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq208 125 7e-24 seq49 102 8e-17 >seq208 Length=2424200 Score = 125 bits (138), Expect = 7e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| ||||| || | || ||||| || ||||| || || Sbjct 1738290 TCATCTCTGCTGATCAGTTCATTGGAAAAAGTAAGCCCAGGCATTAACCCTCGCTTCTTC 1738231 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||||| |||| ||||| ||||| |||||||||||||| ||||||||||| || || Sbjct 1738230 AGCCAAAAGATAGACGCAAAAGAACCGGAAAAGAATATTCCTTCCACAGCTGCGAAGGCG 1738171 Query 11774 ACTACTCTTTCTCC 11787 ||||||| |||||| Sbjct 1738170 ACTACTCGTTCTCC 1738157 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 11891 TCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCT 11950 ||| | | ||||||||| || | |||||| |||||||||||||| || |||||||| || Sbjct 1737130 TCTTTGATATATGTATCAATAAGTAAACTGTACATTTCTGAATGGATGTTTTCCATGGCG 1737071 Query 11951 ATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 || || || ||||||||||| || || |||| Sbjct 1737070 ATCTGGAAACCATAGAAACAGCGAGCTTCTG 1737040 >seq49 Length=4988178 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| || || || | || ||||||| ||||| || | Sbjct 468617 CTTCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGACCCGGCATCAGTCCTCTCTTCT 468676 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 | | |||||||||||| ||||| | |||||| ||||| ||||| || || | ||||| | Sbjct 468677 TGAGCCAAAATATAGCTGCAAAAGCACCAGAGAAGAAAATTCCTTCAACCGAGGCAAAAG 468736 Query 11772 CTACTACTCTTTCTCC 11787 | || | ||| ||||| Sbjct 468737 CAACCAGTCTCTCTCC 468752 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 ||| || |||||||||||||| ||||| |||||||| | |||||| || |||| || || Sbjct 472205 ATAAGTGTCTATTAATAAACTGTACATCTCTGAATGCACATTTTCTATTACTATCTGGAA 472264 Query 11959 TCCATAGAAACATCGTGCCTCTG 11981 || |||||||| || ||||||| Sbjct 472265 GCCGTAGAAACAGCGAGCCTCTG 472287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468444278156560