Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq49 107 3e-18 seq74 96.9 5e-15 seq208 91.5 2e-13 seq148 84.2 3e-11 >seq49 Length=4988178 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| ||||| | ||| ||||| || || || || ||||| || || | ||| || Sbjct 468619 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGACCCGGCATCAGTCCTCTCTTCTTG 468678 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 36301 ||||||||||| | ||||| | ||||| |||||||||||||| || | ||||| ||| Sbjct 468679 AGCCAAAATATAGCTGCAAAAGCACCAGAGAAGAAAATTCCTTCAACCGAGGCAAAAGCA 468738 Query 36302 ATAAGTCTCTCTCC 36315 | ||||||||||| Sbjct 468739 ACCAGTCTCTCTCC 468752 >seq74 Length=4115021 Score = 96.9 bits (106), Expect = 5e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 9227 TTATTTCTTATTAGATACTTCCAA-AAGCTGTAACAGATGCAAGAACAGATTGATGATAT 9285 ||| || |||||| || |||| | |||| | | ||| || | |||||||||||||| | Sbjct 1832445 TTACTTTTTATTAAATGCTTCAAGCAAGC-GAAGCAGGTGGAGAAACAGATTGATGATGT 1832387 Query 9286 CCAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTG 9345 ||||||| || || || | || | | || |||||||| || || || || || || Sbjct 1832386 CCAAGTATAAGTTAATTGCAGCCAGTATGTATTCTTCAGGGGAAAGTTTGTGCATGAGCA 1832327 Query 9346 AGTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCA 9405 ||| ||||||||||| || || || ||||| | |||||| || ||||| | |||| Sbjct 1832326 GGTGTGTGTCATAGATTATAAAGCCACAGAACAGAAGGGCTCCTGCAGCAGCAAATACCA 1832267 Query 9406 GCTCCACTGTTTCACTTTGCACAAA 9430 | || | | |||||| || | ||| Sbjct 1832266 GTTCTATTACTTCACTATGGAAAAA 1832242 Score = 89.7 bits (98), Expect = 7e-13 Identities = 104/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 9465 AAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATAT 9524 |||||||| || ||||||||| ||| |||||||| || || || || | ||||||| Sbjct 1830023 AAAGTAACGTAC---CCTGCTCCAGTTTTGCTGAAATCCCTTTTGGACTGCAAAGTATAT 1829967 Query 9525 GCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACA 9584 | || ||||| | |||||| |||||||| || || || ||||| | || || || Sbjct 1829966 GTTGTGAGAGCCAAAAACACAGCAGTAGTGAGAATAAAGGCTTGTAGGACAACTGATACT 1829907 Query 9585 TCATAGAAAGTAACAACAGA 9604 ||||||||||| || | ||| Sbjct 1829906 TCATAGAAAGTCACTAGAGA 1829887 >seq208 Length=2424200 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478 ||||| | |||||||||||| | | ||| |||||||| ||||| |||||||| ||||| Sbjct 1737130 TCTTTGATATATGTATCAATAAGTAAACTGTACATTTCTGAATGGATGTTTTCCATGGCG 1737071 Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 || || || || |||||||| | ||| || || | ||| |||||| Sbjct 1737070 ATCTGGAAACCATAGAAACAGCGAGCTTCTGTCACCTGCACTTCT 1737026 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 || ||||| |||||||||| ||||||||||| || |||||||| | |||||| ||||| Sbjct 1732681 ACCTCTTCAGCTGTCCAAAAGGATGCCTCTGCTTTCTTATACATTTGCCAGATATCATGG 1732622 Query 36716 TATTGAATTGGAAAAATAACAAA 36738 || ||||| ||||| || ||||| Sbjct 1732621 TACTGAATGGGAAAGATGACAAA 1732599 >seq148 Length=2989754 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| || ||||| ||||| | || || || || ||||| || || | | Sbjct 2363381 CACTGAATACTTTCTTGGTTTCCTTGTGCAAGTTGGAGACTGCAATTCTGGCTGCCAGGA 2363322 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || | | || || || ||||| | ||||||||||||||||||| Sbjct 2363321 TGGCATAGTCTGGGTACTTGGTGGTCAGCGTCGCTGCGGTCTCGGCTGCCAGAGTGTCCA 2363262 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||||| || || || || | || | || ||||| || ||||| Sbjct 2363261 GCTCTACTGTAGTGACGCCGCTGTAAAGACCCTGGATCACTTTCAT 2363216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658059684777160