Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq102 91.5 1e-13 seq530 86.0 6e-12 >seq102 Length=3625303 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| ||||||| | ||||| || || || |||||||| ||| Sbjct 3125623 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTG 3125564 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || |||||| || | | ||| | ||||| | ||||||||||| | || | Sbjct 3125563 TCCTGGATTTTAGCCTTGACATTTTCAATGGTGTCACTCGGCTCCACCTCCAGAGTGATG 3125504 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||||||||| || || || || || ||||| Sbjct 3125503 GTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 3125469 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || ||||| || || ||||| || ||| | |||| Sbjct 3125911 CGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 3125852 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| ||||||| | ||||| || ||||| || ||||| ||| Sbjct 3125851 TCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATACCTTCCTTG 3125792 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || |||||| || | | || | ||||| | ||||||||||| | ||| | Sbjct 3125791 TCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCACTCGGCTCCACCTCCAAGGTGATG 3125732 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| ||||| || || || || || ||||| Sbjct 3125731 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 3125697 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || | ||| | || ||||| || || ||||| || ||| Sbjct 3125467 CCACCTCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 3125408 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| ||||| || || ||| ||||||| | |||||||| || || Sbjct 3125407 AGCGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3125348 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| |||||| || | | || | ||||| | ||||||||| Sbjct 3125347 ATGCCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCACTTGGCTCCACC 3125288 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||| || | ||||| || || || ||||| Sbjct 3125287 TCCAAGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAAATCTGCAT 3125241 >seq530 Length=912484 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || ||||| || || ||||| || ||| | |||| Sbjct 248652 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 248593 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| ||||||| | ||||| || || || ||||| |||||| Sbjct 248592 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTG 248533 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | |||||| | ||||||||||| | ||| | Sbjct 248532 TCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTCGGCTCCACCTCCAGGGTGATG 248473 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || || || || ||||| Sbjct 248472 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 248438 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || ||||| || || ||||| || ||| | |||| Sbjct 248880 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 248821 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| ||||||| | ||||| || || || ||||| |||||| Sbjct 248820 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTG 248761 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| | ||||||||||| | ||| | Sbjct 248760 TCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATG 248701 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || || || || ||||| Sbjct 248700 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 248666 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || ||||| || || ||||| || ||| | |||| Sbjct 249108 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 249049 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| ||||||| | ||||| || || || ||||| |||||| Sbjct 249048 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTG 248989 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| | ||||||||||| | ||| | Sbjct 248988 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATG 248929 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || || || || ||||| Sbjct 248928 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 248894 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || ||||| || || ||||| || ||| | |||| Sbjct 249336 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 249277 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| ||||||| | ||||| || || || ||||| |||||| Sbjct 249276 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTG 249217 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| | ||||||||||| | ||| | Sbjct 249216 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATG 249157 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || || || || ||||| Sbjct 249156 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 249122 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || ||||| || || ||||| || ||| | |||| Sbjct 249564 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 249505 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| ||||||| | ||||| || || || ||||| |||||| Sbjct 249504 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTG 249445 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| | ||||||||||| | ||| | Sbjct 249444 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATG 249385 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || || || || ||||| Sbjct 249384 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 249350 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || ||||| || || ||||| || ||| | |||| Sbjct 249792 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 249733 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| ||||||| | ||||| || || || ||||| |||||| Sbjct 249732 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTG 249673 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| | ||||||||||| | ||| | Sbjct 249672 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATG 249613 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || || || || ||||| Sbjct 249612 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 249578 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || ||||| || || ||||| || ||| | |||| Sbjct 250020 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 249961 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| ||||||| | ||||| || || || ||||| |||||| Sbjct 249960 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTG 249901 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| | ||||||||||| | ||| | Sbjct 249900 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATG 249841 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || || || || ||||| Sbjct 249840 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 249806 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || ||||| || || ||||| || ||| | |||| Sbjct 250248 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 250189 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| ||||||| | ||||| || || || ||||| |||||| Sbjct 250188 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTG 250129 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| | || |||||||| | ||| | Sbjct 250128 TCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTCGGTTCCACCTCCAGGGTGATG 250069 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || || || || ||||| Sbjct 250068 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 250034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495978745200800