Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq49 116 5e-21 seq148 96.9 5e-15 >seq49 Length=4988178 Score = 116 bits (128), Expect = 5e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| ||||| ||||| ||||| || || || || ||||| || || | ||| || Sbjct 468619 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGACCCGGCATCAGTCCTCTCTTCTTG 468678 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||||||||| | ||||| | ||||| ||||| |||||||| || | |||||| ||| Sbjct 468679 AGCCAAAATATAGCTGCAAAAGCACCAGAGAAGAAAATTCCTTCAACCGAGGCAAAAGCA 468738 Query 50104 ACAAGTCTCTCTCC 50117 || ||||||||||| Sbjct 468739 ACCAGTCTCTCTCC 468752 >seq148 Length=2989754 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| |||| ||| || ||||||||||| | || || || || |||||||| || | | Sbjct 2363381 CACTGAATACTTTCTTGGTTTCCTTGTGCAAGTTGGAGACTGCAATTCTGGCTGCCAGGA 2363322 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 ||||||| ||||| | | || || || ||||| | ||||||||||||||||||| Sbjct 2363321 TGGCATAGTCTGGGTACTTGGTGGTCAGCGTCGCTGCGGTCTCGGCTGCCAGAGTGTCCA 2363262 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 ||||| || || || || | || | || ||||| || ||||| Sbjct 2363261 GCTCTACTGTAGTGACGCCGCTGTAAAGACCCTGGATCACTTTCAT 2363216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718145356528360