Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq208 105 6e-18 seq49 89.7 5e-13 >seq208 Length=2424200 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| || || ||||| || ||||| || | || ||||| || ||||| || | Sbjct 1738292 CCTCATCTCTGCTGATCAGTTCATTGGAAAAAGTAAGCCCAGGCATTAACCCTCGCTTCT 1738233 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | |||||| || | ||||| || ||||||||||||||||| || || || || || | Sbjct 1738232 TCAGCCAAAAGATAGACGCAAAAGAACCGGAAAAGAATATTCCTTCCACAGCTGCGAAGG 1738173 Query 14014 CTATTAATCGTTCTCC 14029 | | || ||||||||| Sbjct 1738172 CGACTACTCGTTCTCC 1738157 Score = 91.5 bits (100), Expect = 1e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 || ||||||||||||||||| || |||||||| || || ||||||||||| || ||||| Sbjct 1737124 ATATATGTATCAATAAGTAAACTGTACATTTCTGAATGGATGTTTTCCATGGCGATCTGG 1737065 Query 14202 AAACCATAAAAGCATCTAGCTTC 14224 |||||||| || || | |||||| Sbjct 1737064 AAACCATAGAAACAGCGAGCTTC 1737042 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 || || || || ||||| ||||| || | || | |||||||||||||||||||| Sbjct 1740927 TTGGACATCACTCCCATCCGCTGATACTCTCCCACACGCTTTTCAAAGAAGTTAGTTTTG 1740868 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATT 13660 || |||||||| ||||| ||||| || ||||||||||| Sbjct 1740867 CCCTCCAGTGAGATATTCTCCATGAAGTCAAATGGATT 1740830 >seq49 Length=4988178 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 13896 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13955 |||||||| ||||||||||| || || || || | || ||||||| ||||| || || Sbjct 468619 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGACCCGGCATCAGTCCTCTCTTCTTG 468678 Query 13956 AACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14014 | ||||||||| || ||||| | || || ||||| ||||| ||||| | ||||| || Sbjct 468679 AGCCAAAATATAGCTGCAAAAGCACCAGAGAAGAAAATTCCTTCAACCGAGGCAAAAGC 468737 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 13522 ACTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTT 13581 |||| || ||| ||||||| | ||| || |||| | | | | || || || | | Sbjct 463355 ACTAGAAGTCAGCATCTAAAGTAAACACGATATCATTTGTTTCAGCCATCACTGCAAAAC 463414 Query 13582 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13641 |||||| || |||||| || |||||||| || ||||| ||||||||||| || || | Sbjct 463415 GTTGATACTCCGAAACTCTCTTCTCAAAGAAATTGGTTTTTCCTTCCAGTGAAATGTTCT 463474 Query 13642 CCATAAAATCAAATGGATTT 13661 |||| |||||||| || ||| Sbjct 463475 CCATGAAATCAAAAGGGTTT 463494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479645552746600