Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq208 114 2e-20 seq49 111 2e-19 seq148 96.9 5e-15 >seq208 Length=2424200 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | ||| |||||||| || || || ||||||| || ||||| | Sbjct 1738292 CCTCATCTCTGCTGATCAGTTCATTGGAAAAAGTAAGCCCAGGCATTAACCCTCGCTTCT 1738233 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| ||||||||||| || || |||||||| |||||||| || || || |||| Sbjct 1738232 TCAGCCAAAAGATAGACGCAAAAGAACCGGAAAAGAATATTCCTTCCACAGCTGCGAAGG 1738173 Query 42207 C 42207 | Sbjct 1738172 C 1738172 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 ||||| | ||||||||| || | | ||| |||||||||||||| |||||||| ||||| Sbjct 1737130 TCTTTGATATATGTATCAATAAGTAAACTGTACATTTCTGAATGGATGTTTTCCATGGCG 1737071 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 ||||| || || |||||||| | || || || ||||| |||||| Sbjct 1737070 ATCTGGAAACCATAGAAACAGCGAGCTTCTGTCACCTGCACTTCT 1737026 >seq49 Length=4988178 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| ||||| | ||| ||||| || || || || ||||| || || | ||| || Sbjct 468619 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGACCCGGCATCAGTCCTCTCTTCTTG 468678 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208 ||||||||||||| ||||| | ||||| ||||| |||||||| || | ||||| ||| Sbjct 468679 AGCCAAAATATAGCTGCAAAAGCACCAGAGAAGAAAATTCCTTCAACCGAGGCAAAAGCA 468738 Query 42209 ATAAGTCTCTCTCC 42222 | ||||||||||| Sbjct 468739 ACCAGTCTCTCTCC 468752 >seq148 Length=2989754 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| |||| ||| || ||||||||||| | || || || || |||||||| || || | Sbjct 2363381 CACTGAATACTTTCTTGGTTTCCTTGTGCAAGTTGGAGACTGCAATTCTGGCTGCCAGGA 2363322 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||||| ||||| | | || || || ||||| | || |||||||||||||||| Sbjct 2363321 TGGCATAGTCTGGGTACTTGGTGGTCAGCGTCGCTGCGGTCTCGGCTGCCAGAGTGTCCA 2363262 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 ||||| || || || || | || | || ||||| || ||||| Sbjct 2363261 GCTCTACTGTAGTGACGCCGCTGTAAAGACCCTGGATCACTTTCAT 2363216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671023856339240