Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq427 159 8e-34 seq102 143 6e-29 seq530 132 1e-25 seq49 111 4e-19 seq208 107 4e-18 seq507 87.8 4e-12 >seq427 Length=1217992 Score = 159 bits (176), Expect = 8e-34 Identities = 136/168 (81%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 78483 CTAGAGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCT 78542 || |||| ||||||||||| || || || |||||||| || ||||| ||||| | || | Sbjct 60730 CTGGAGCTTTATGGTGGTACTACATATCAAAAGGAATCGAGTACCTGGATACAGTATTTT 60789 Query 78543 TCATCCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTA 78602 ||||| || ||||||||||||| ||||| | |||||||||||| ||||| || | || | Sbjct 60790 TCATCTTAAGAAAGAAATTTAACCAAATCACTTTTCTACATGTTTATCACCACTACACCA 60849 Query 78603 TGTTTACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 ||||||||||| | ||| | ||||| |||||| | ||||| ||||||| Sbjct 60850 TGTTTACTTTGTGGTGGGTTGGTATAAAATGGGTTGCAGGGGGACAAG 60897 >seq102 Length=3625303 Score = 143 bits (158), Expect = 6e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | || || || ||||| || || ||||| Sbjct 3125470 ATCCCACCTCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 3125411 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || || ||||| || |||||||| ||||| || Sbjct 3125410 GAAAGCGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGG 3125351 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || || || ||||| || | ||| || || || || Sbjct 3125350 GGAATGCCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCACTTGGCTCC 3125291 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| | || || ||||| ||||| || ||||| ||||| |||||||||||| Sbjct 3125290 ACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAAATCTGCATTTTG 3125237 >seq530 Length=912484 Score = 132 bits (146), Expect = 1e-25 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || ||||| Sbjct 248667 ATGCCTCCCCTCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 248608 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || || ||||| || |||||||| || || || Sbjct 248607 GAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGG 248548 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||| ||||| ||||| || || || || || | ||| ||||| || || Sbjct 248547 GGAATGCCCTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTCGGCTCC 248488 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||| || || || || || ||||| ||||||||||| Sbjct 248487 ACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATTTT 248435 >seq49 Length=4988178 Score = 111 bits (122), Expect = 4e-19 Identities = 85/101 (84%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 ||||| || ||||| || || || | ||||| ||||| |||||||||| ||||||||| Sbjct 472303 CAAGAAGTGCAGATCCCAGAGGCTCGCTGTTTCTACGGCTTCCAGATAGTAATAGAAAAT 472244 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 | |||||||||||||||||| |||||||||| |||||||| Sbjct 472243 GTGCATTCAGAGATGTACAGTTTATTAATAGACACTTATAT 472203 Score = 105 bits (116), Expect = 2e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 ||||| || | |||||||||||| | || ||||| || ||||| || || ||||||| Sbjct 468752 GGAGAGAGACTGGTTGCTTTTGCCTCGGTTGAAGGAATTTTCTTCTCTGGTGCTTTTGCA 468693 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| |||||| | ||||| ||||| || ||||| || | |||||||| || ||| | Sbjct 468692 GCTATATTTTGGCTCAAGAAGAGAGGACTGATGCCGGGTCTTACTTTCTCCAATGAACTT 468633 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 468632 ATTAGCAGAGATGAAG 468617 >seq208 Length=2424200 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| || || || ||||| ||||| ||||||||||| || |||||||| Sbjct 1738157 GGAGAACGAGTAGTCGCCTTCGCAGCTGTGGAAGGAATATTCTTTTCCGGTTCTTTTGCG 1738216 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||||||||| ||||||| |||| | ||||| || | ||||| || || ||| || Sbjct 1738217 TCTATCTTTTGGCTGAAGAAGCGAGGGTTAATGCCTGGGCTTACTTTTTCCAATGAACTG 1738276 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 1738277 ATCAGCAGAGATGA 1738290 >seq507 Length=976482 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425 ||| | || ||||| ||||| ||||| ||||| | || ||||| || ||||| |||||| Sbjct 343443 GATACCTTTTGAATGTTATAATCAGACAGAGTGCGGCCATCTTCCAGCTGTTTACCAGCA 343502 Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 ||||| || | |||||| |||||||| |||||| Sbjct 343503 AAAATCAGACGCTGTTGGTCAGGAGGAATTCCT 343535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151195570737292