Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq102 120 3e-22 seq530 116 3e-21 seq32 84.2 2e-11 >seq102 Length=3625303 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| || | ||| | || || ||||| || | ||| || ||| Sbjct 3125467 CCACCTCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 3125408 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| |||||||| || ||| ||||||| | || ||||||||||| ||| Sbjct 3125407 AGCGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3125348 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959 || ||||| ||||| | ||||| |||||||| | | |||||| | ||| || || Sbjct 3125347 ATGCCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCA-CTTGGCTCCAC 3125289 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| || ||||||||||| |||||||| Sbjct 3125288 CTCCAAGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAAATCTGCAT 3125241 Score = 109 bits (120), Expect = 5e-19 Identities = 167/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 94770 AATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGT 94829 || |||| | || || |||| |||| || | ||| | || || ||||| || | || Sbjct 3125934 AACTTTAAATACCACCCCTCAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGT 3125875 Query 94830 TATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889 | || ||| | ||| | ||| || ||||| || ||| ||||||| | || |||| Sbjct 3125874 TGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCT 3125815 Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949 | || |||||||||||||| ||||| | ||||| |||||||| | | |||||| Sbjct 3125814 GGTCAGGAGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCAC 3125755 Query 94950 CGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | |||||||| || ||||| | || ||||||||||||||||| Sbjct 3125754 TCGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 3125697 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| || | ||| | || || ||||| || | ||| || || Sbjct 3125695 CCACCTCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 3125636 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| |||||||| || ||| ||||||| | || ||||| ||||| ||| Sbjct 3125635 AGGGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 3125576 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | ||||| |||||||| | | |||||| | || || Sbjct 3125575 ATGCCTTCCTTGTCCTGGATTTTAGCCTTGACATTTTCAATGGTGTCACTCGGCTCCACC 3125516 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || | || ||||||||||||||||| Sbjct 3125515 TCCAGAGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 3125469 >seq530 Length=912484 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| |||| |||| ||| | || || ||||| || | ||| || ||| Sbjct 248892 CCTCCCCTCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 248833 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| || ||| ||||||| | || ||||| || || ||| Sbjct 248832 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGA 248773 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | || || ||||||||| | | |||||| | || || Sbjct 248772 ATGCCCTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTCGGCTCCACC 248713 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || || || ||||||||||||||||||| Sbjct 248712 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGC 248664 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| |||| |||| ||| | || || ||||| || | ||| || ||| Sbjct 250260 CCTCCCCTCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 250201 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| || ||| ||||||| | || ||||| || || ||| Sbjct 250200 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGA 250141 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | || || ||||||||| | | |||||| | || || Sbjct 250140 ATGCCCTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTCGGTTCCACC 250081 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || || || ||||||||||||||||||| Sbjct 250080 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATGC 250032 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| |||| |||| ||| | || || ||||| || | ||| || ||| Sbjct 248664 CCTCCCCTCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 248605 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| || ||| ||||||| | || ||||| || || ||| Sbjct 248604 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGA 248545 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959 || || |||||||| | || || ||||||||| | | ||||| || || || || Sbjct 248544 ATGCCCTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTC-GCTCGGCTCCAC 248486 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||||||||||||||| Sbjct 248485 CTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 248438 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| |||| |||| ||| | || || ||||| || | ||| || ||| Sbjct 249120 CCTCCCCTCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 249061 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| || ||| ||||||| | || ||||| || || ||| Sbjct 249060 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGA 249001 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | || || ||||| ||| | | |||||| | || || Sbjct 249000 ATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTCGGCTCCACC 248941 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || || || ||||||||||||||||||| Sbjct 248940 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGC 248892 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| |||| |||| ||| | || || ||||| || | ||| || ||| Sbjct 249348 CCTCCCCTCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 249289 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| || ||| ||||||| | || ||||| || || ||| Sbjct 249288 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGA 249229 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | || || ||||| ||| | | |||||| | || || Sbjct 249228 ATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTCGGCTCCACC 249169 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || || || ||||||||||||||||||| Sbjct 249168 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGC 249120 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| |||| |||| ||| | || || ||||| || | ||| || ||| Sbjct 249576 CCTCCCCTCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 249517 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| || ||| ||||||| | || ||||| || || ||| Sbjct 249516 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGA 249457 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | || || ||||| ||| | | |||||| | || || Sbjct 249456 ATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTCGGCTCCACC 249397 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || || || ||||||||||||||||||| Sbjct 249396 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGC 249348 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| |||| |||| ||| | || || ||||| || | ||| || ||| Sbjct 249804 CCTCCCCTCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 249745 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| || ||| ||||||| | || ||||| || || ||| Sbjct 249744 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGA 249685 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | || || ||||| ||| | | |||||| | || || Sbjct 249684 ATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTCGGCTCCACC 249625 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || || || ||||||||||||||||||| Sbjct 249624 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGC 249576 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| |||| |||| ||| | || || ||||| || | ||| || ||| Sbjct 250032 CCTCCCCTCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 249973 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| || ||| ||||||| | || ||||| || || ||| Sbjct 249972 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGA 249913 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | || || ||||| ||| | | |||||| | || || Sbjct 249912 ATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTCGGCTCCACC 249853 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || || || ||||||||||||||||||| Sbjct 249852 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGC 249804 >seq32 Length=5936712 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 94903 ACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTC 94962 |||||||||||| | |||||| ||||||||| ||| ||||| | | || || || Sbjct 2259445 ACCTTCTTTGTCCTGAATTTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTC 2259386 Query 94963 AATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || |||||||| || || || | ||||||||||||||||||||| Sbjct 2259385 AAGGGTGATGGTCTTGCCCGTCAAGGTTTTCACAAAGATCTGCATG 2259340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448214155553640