Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq248 212 1e-50 seq21 168 1e-37 seq548 154 2e-33 seq4 150 3e-32 seq604 147 3e-31 >seq248 Length=2098064 Score = 212 bits (234), Expect = 1e-50 Identities = 195/247 (79%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||||| |||||||||||||| |||||||||||| ||||||||||||| Sbjct 891113 TCTTCGGGATAACATCCAGGGAATCACCAAGCCTGCTATCCGTCGTTTGGCTCGTCGTGG 891054 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||||| ||||| ||||||| || |||| || |||| ||| | ||| |||||| | || Sbjct 891053 GGGAGTGAAGCGCATCTCTGGCCTGATCTACGAGGAGACTCGAGGTGTGTTGAAGGTTTT 890994 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| | | ||| || | |||||| | ||| |||||||| || ||||| ||||| || Sbjct 890993 CCTAGAAAACGTGATTCGTGATGCAGTTACCTACACCGAGCATGCCAAACGGAAGACCGT 890934 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || |||||||| | |||||||| || ||||| || || |||| | ||||||||||| Sbjct 890933 GACTGCCATGGATGTAGTCTATGCTTTAAAACGCCAGGGTCGTACCCTGTATGGTTTTGG 890874 Query 16693 AAGTTAA 16699 ||||| Sbjct 890873 CGGTTAA 890867 Score = 158 bits (174), Expect = 2e-34 Identities = 191/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||||| ||||||||||||||||| || || || ||||| |||||| Sbjct 872652 GCCAAGAGACATCGCAAGGTGCTTCGAGATAACATCCAGGGCATTACTAAGCCTGCTATC 872593 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||||||||| || || || ||||| | ||||| ||| |||| || |||| Sbjct 872592 CGGCGCTTGGCTCGTCGCGGAGGGGTGAAGCGCATTTCTGGCTTGATCTACGAGGAGACC 872533 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | || | ||| ||| |||| || || | ||| || ||| Sbjct 872532 CGTGGCGTCTTGAAAGTGTTTTTGGAGAACGTGATCCGCGACGCCGTGACCTACACGGAG 872473 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || || ||||| ||||| ||||||| | || ||||| ||||| || |||||| Sbjct 872472 CATGCCAAGCGAAAGACCGTCACGGCCATGGACGTTGTGTATGCTTTGAAGCGCCAAGGC 872413 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | ||||||||||||| Sbjct 872412 CGGACCCTTTATGGTTTTGG 872393 Score = 156 bits (172), Expect = 7e-34 Identities = 182/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| |||||||||||||| || || ||||| |||||||||||| ||||||| ||||| Sbjct 869371 CTTCGTGATAACATCCAAGGTATTACTAAGCCCGCTATCCGTCGTTTGGCTCGCCGTGGA 869312 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| | || || ||| |||| || |||| |||| ||| ||||| | || Sbjct 869311 GGAGTAAAGCGTATTTCAGGCTTGATCTACGAGGAGACGCGTGGTGTGCTGAAGGTTTTT 869252 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| || || | ||||| | || || ||||| ||||| || ||||| || Sbjct 869251 CTGGAGAATGTGATTCGCGATGCGGTGACTTACACTGAGCATGCTAAGCGGAAGACCGTG 869192 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || |||||||| | || ||||| |||| || || ||||| | | || || ||||| Sbjct 869191 ACTGCCATGGATGTTGTGTATGCTCTGAAGCGGCAGGGCCGCACCTTGTACGGCTTTGGG 869132 Query 16694 AGTTAA 16699 ||||| Sbjct 869131 GGTTAA 869126 >seq21 Length=6710168 Score = 168 bits (186), Expect = 1e-37 Identities = 206/281 (73%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || || | | || ||||||||||||||||| || || ||||| ||||| Sbjct 5068597 GCTAAGCGCCACCGGAAAGTGCTGCGAGATAACATCCAAGGCATTACGAAGCCGGCTATT 5068656 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || | |||||||| || || ||||||||| |||| || ||| |||| || |||| Sbjct 5068657 CGCCGCTTAGCTCGTCGGGGAGGTGTCAAGCGTATCTCGGGCTTGATCTACGAGGAGACC 5068716 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| ||||||| ||| || ||| ||||| | ||||||||| Sbjct 5068717 CGTGGGGTGCTGAAGGTCTTCCTGGAGAATGTCATCAGGGATGCCGTGACTTATACCGAG 5068776 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | ||||| || ||| ||||||| | || || || ||||| || ||||| Sbjct 5068777 CACGCAAAAAGGAAGACGGTGACCGCCATGGACGTGGTGTACGCCTTGAAGCGCCAAGGG 5068836 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATCAAAC 16713 || | | || || ||||| | ||| |||| |||| ||| Sbjct 5068837 CGCACCCTGTACGGATTTGGGGGCTAAGCTTCGAATCTAAC 5068877 Score = 158 bits (174), Expect = 2e-34 Identities = 191/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || || | | || ||||||||||||||||| || || ||||| ||||| Sbjct 5054465 GCTAAGCGCCACCGGAAAGTGCTGCGAGATAACATCCAAGGCATTACGAAGCCGGCTATT 5054406 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || | |||||||| || || ||||||||| |||| || ||| |||| || |||| Sbjct 5054405 CGCCGCTTAGCTCGTCGGGGAGGTGTCAAGCGTATCTCGGGCTTGATCTACGAGGAGACC 5054346 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| ||||||| ||| || ||| ||||| | ||||||||| Sbjct 5054345 CGTGGGGTGCTGAAGGTCTTCCTGGAGAATGTCATCAGGGATGCCGTGACTTATACCGAG 5054286 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | ||||| || ||| ||||||| | || || || ||||| || ||||| Sbjct 5054285 CACGCAAAAAGGAAGACGGTGACCGCCATGGACGTGGTGTACGCCTTGAAGCGCCAAGGG 5054226 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | || || ||||| Sbjct 5054225 CGCACCCTGTACGGATTTGG 5054206 >seq548 Length=871607 Score = 154 bits (170), Expect = 2e-33 Identities = 190/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||||| | ||||| ||||||||||| || ||||||||||| || || Sbjct 287465 GCGAAGAGGCATCGCAAAGTGCTTCGCGATAACATCCAGGGCATCACCAAGCCCGCCATT 287524 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||||||| || || ||||| |||||| | || || | |||| || |||| Sbjct 287525 CGTCGCCTGGCTCGCCGCGGGGGAGTGAAGCGTATTTCGGGGCTTATCTACGAGGAGACC 287584 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||| | |||||| ||| |||||| | || || | || |||||| Sbjct 287585 CGCGGGGTCCTCAAGGTTTTCCTCGAGAACGTTATTCGGGACGCGGTGACGTACACCGAG 287644 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| || || |||||||| | |||||||| ||||||| |||||| Sbjct 287645 CATGCGAAGAGGAAGACGGTGACGGCCATGGATGTGGTCTATGCCCTGAAACGCCAAGGC 287704 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| |||| || || || Sbjct 287705 CGTACCCTTTACGGATTCGG 287724 Score = 129 bits (142), Expect = 9e-26 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||||||||| || || || || |||||||| || || || Sbjct 307876 CGCGACAACATCCAGGGGATCACCAAGCCTGCCATTCGCCGCCTGGCTCGCCGCGGAGGC 307817 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| |||| || | | || || || | || | || ||||| | || || Sbjct 307816 GTGAAGCGTATCTCGGGCCTCATTTACGAGGAAACCCGAGGCGTCCTGAAGGTGTTTCTT 307757 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | || |||| |||||| | || ||||||||||| ||| | ||||| |||||| Sbjct 307756 GAAAATGTCATCCGCGATGCTGTGACTTACACCGAGCACGCGAAAAGGAAGACCGTCACC 307697 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||||||| | ||||| || ||||||| || ||||||| | || ||||| || Sbjct 307696 GCCATGGATGTGGTCTACGCTCTGAAACGCCAGGGCCGTACTTTGTACGGTTTCGG 307641 >seq4 Length=10978853 Score = 150 bits (166), Expect = 3e-32 Identities = 194/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || || | | || ||||| |||||||| || ||||||||||| || ||| Sbjct 8532084 GCCAAGCGCCACCGGAAAGTGCTGCGAGACAACATCCAGGGCATCACCAAGCCGGCCATC 8532025 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||||||| || || || || ||||| |||| || ||| |||| || |||| Sbjct 8532024 CGGCGCCTGGCTCGGCGGGGCGGCGTGAAGCGCATCTCGGGCTTGATCTACGAGGAGACG 8531965 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||||| ||| || |||| || || || || || ||| Sbjct 8531964 CGGGGAGTGCTGAAGGTGTTCCTGGAGAATGTGATCCGCGACGCGGTCACGTACACAGAG 8531905 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| || || |||||||| | || || || ||||||| |||||| Sbjct 8531904 CATGCCAAGAGGAAGACCGTGACGGCCATGGATGTGGTGTACGCGCTGAAACGCCAAGGC 8531845 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | |||||||||||| |||||| Sbjct 8531844 CGGACCCTCTATGGTTTTGGAGGTTAAT 8531817 >seq604 Length=741506 Score = 147 bits (162), Expect = 3e-31 Identities = 174/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || || |||||||||||||||||||| || ||||| || |||| || || || || Sbjct 472362 CGCGACAATATCCAAGGAATCACCAAGCCGGCCATCCGCCGCTTGGCCCGCCGAGGGGGC 472303 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 |||||||| | || || | |||| || || | || | || ||||| ||||||| Sbjct 472302 GTCAAGCGCATTTCGGGGCTCATCTACGAGGAAACCCGGGGGGTCCTGAAGGTCTTCCTG 472243 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| ||||| || || ||||||||||| ||| | ||||| |||||| Sbjct 472242 GAGAACGTGATCCGCGATGCCGTCACTTACACCGAGCACGCGAAAAGGAAGACCGTCACC 472183 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||||| |||||||||| |||||||| || || || | |||| || || || Sbjct 472182 GCCATGGACGTCGTCTATGCCTTGAAACGCCAGGGACGGACCCTTTACGGCTTCGG 472127 Score = 145 bits (160), Expect = 1e-30 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || ||||||||||| ||||||||||| || ||||| || ||||||| || || || Sbjct 396499 CGGGACAACATCCAAGGGATCACCAAGCCGGCCATCCGCCGCTTGGCTCGCCGAGGGGGC 396558 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 |||||||| | || || | |||| || || | || | || ||||| ||||||| Sbjct 396559 GTCAAGCGCATTTCGGGGCTCATCTACGAGGAAACCCGGGGGGTCCTGAAGGTCTTCCTG 396618 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| ||||| || || ||||||| ||| ||| | ||||| |||||| Sbjct 396619 GAGAACGTGATCCGCGATGCCGTCACTTACACCGAGCTCGCGAAAAGGAAGACCGTCACC 396678 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 ||||||| ||||||| || |||||||| || || || | |||| || || || || Sbjct 396679 GCCATGGACGTCGTCTACGCCTTGAAACGCCAGGGACGGACCCTTTACGGCTTCGGCGGT 396738 Query 16697 TAA 16699 ||| Sbjct 396739 TAA 396741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79062629193057