Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1182 131 1e-25 seq1120 131 1e-25 seq1062 131 1e-25 seq1099 118 7e-22 seq370 107 1e-18 seq1457 104 2e-17 seq76 89.7 3e-13 >seq1182 Length=153633 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 70867 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 70926 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 70927 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 70961 >seq1120 Length=185179 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 72258 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 72317 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 72318 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 72352 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 75156 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTCGGCTATCGGTCTCGT 75215 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 75216 GCCCGTATTTAGCCTTA 75232 >seq1062 Length=227023 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 190830 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 190889 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 190890 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 190924 >seq1099 Length=199046 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 128530 AAGCCTATTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 128471 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| ||||||||||||||||||||| Sbjct 128470 TCATCCATTCATGTGCGTCACTAATTAGATGACGA 128436 >seq370 Length=1411314 Score = 107 bits (118), Expect = 1e-18 Identities = 79/92 (86%), Gaps = 5/92 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 953335 AAGCCCATTCCCTTGGCTGTGGTTTCGCTAGATAGTACGTAGGGACAGAGGGAATCTCGT 953394 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGA 25988 | |||| |||||| | |||||||||||||||| Sbjct 953395 TCATCCATTCATGTGTGTCACTAATTAGATGA 953426 >seq1457 Length=59721 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||| | |||||||||| ||||| | |||||||| Sbjct 24485 AAGCCCGTTCCCTTGGCTGTGGTTTTGTTAGATAGTAGGTAGGGAGAGTGCGAATCTCGT 24426 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| || |||||||||||||||| Sbjct 24425 TCATCCATTCATGCTTGTTACTAATTAGATGACGA 24391 >seq76 Length=4021888 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||| ||||||| Sbjct 2819451 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTCAACTATTGGTCTCGT 2819392 Query 20007 GGTAATATTTAGCCTTA 20023 | | ||| |||||||| Sbjct 2819391 GCCAGTATATAGCCTTA 2819375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334891074258419