Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq102 118 9e-22 seq530 113 4e-20 >seq102 Length=3625303 Score = 118 bits (130), Expect = 9e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || ||||||| | || |||||| || | Sbjct 3125697 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCGAGT 3125756 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| |||||| ||||| ||||| ||||| |||||||| Sbjct 3125757 GACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGTATTCCTCCTGACCAG 3125816 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| ||||| | ||| ||||| Sbjct 3125817 CAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 3125876 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 3125877 ATCCAGAAGGAGTCCACCCTCCA 3125899 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| || ||||||| | || |||||| || | Sbjct 3125469 ATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCGAGT 3125528 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| |||||| ||||| ||||| ||||| || ||||| Sbjct 3125529 GACACCATTGAAAATGTCAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 3125588 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| || || | || ||||| Sbjct 3125589 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTACAAC 3125648 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | || || | || ||||| || Sbjct 3125649 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGAGGTGG 3125695 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || | || || || ||||||| | || |||||| | Sbjct 3125240 AATGCAGATTTTTGTGAAAACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAGCCAAG 3125299 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || ||| | ||| |||||| ||||| ||||| ||||| || || || Sbjct 3125300 TGACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCA 3125359 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||||||||| || | ||||||| || || | ||| ||||| Sbjct 3125360 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACGCTTTCCGACTACAA 3125419 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | || || | || ||||| || Sbjct 3125420 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGAGGTGG 3125467 >seq530 Length=912484 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | || |||||| || | Sbjct 248894 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCGAGT 248953 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| |||||||| || ||||| || ||||| Sbjct 248954 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACCAG 249013 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| ||||| | ||| ||||| Sbjct 249014 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 249073 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | || || | || || ||||| Sbjct 249074 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGAGGGGAGG 249120 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | || |||||| || | Sbjct 249122 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCGAGT 249181 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| |||||||| || ||||| || ||||| Sbjct 249182 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACCAG 249241 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| ||||| | ||| ||||| Sbjct 249242 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 249301 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | || || | || || ||||| Sbjct 249302 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGAGGGGAGG 249348 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | || |||||| || | Sbjct 249350 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCGAGT 249409 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| |||||||| || ||||| || ||||| Sbjct 249410 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACCAG 249469 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| ||||| | ||| ||||| Sbjct 249470 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 249529 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | || || | || || ||||| Sbjct 249530 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGAGGGGAGG 249576 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | || |||||| || | Sbjct 249578 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCGAGT 249637 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| |||||||| || ||||| || ||||| Sbjct 249638 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACCAG 249697 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| ||||| | ||| ||||| Sbjct 249698 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 249757 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | || || | || || ||||| Sbjct 249758 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGAGGGGAGG 249804 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | || |||||| || | Sbjct 249806 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCGAGT 249865 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| |||||||| || ||||| || ||||| Sbjct 249866 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACCAG 249925 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| ||||| | ||| ||||| Sbjct 249926 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 249985 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | || || | || || ||||| Sbjct 249986 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGAGGGGAGG 250032 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | || |||||| || | Sbjct 248666 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCGAGT 248725 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| |||||||| || ||||| || ||||| Sbjct 248726 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACCAG 248785 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| ||||| | ||| ||||| Sbjct 248786 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 248845 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | || || | || || ||||| Sbjct 248846 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGAGGGGAGG 248892 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||||| || ||||||| | || ||||| || | Sbjct 250034 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAACCGAGT 250093 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| |||||||| || ||||| || ||||| Sbjct 250094 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACCAG 250153 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| ||||| | ||| ||||| Sbjct 250154 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 250213 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | || || | || || ||||| Sbjct 250214 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGAGGGGAGG 250260 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| |||| || || ||||||| | || |||||| || Sbjct 248437 AATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCGAG 248496 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | ||| || ||| |||||||| || ||||| || ||||| Sbjct 248497 CGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACCA 248556 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||||||||| || | ||||||| ||||| | ||| ||||| Sbjct 248557 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 248616 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | || || | || || ||||| Sbjct 248617 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGAGGGGAGG 248664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433255388987435