Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq102 138 1e-27 seq530 122 9e-23 >seq102 Length=3625303 Score = 138 bits (152), Expect = 1e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || |||||| | |||||||||||||||||| Sbjct 3125893 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCG 3125834 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| |||||||| ||||| || || || ||||| ||| Sbjct 3125833 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATTTTAGCCTTG 3125774 Query 64367 ACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | || |||| |||| ||||| || | || | ||||||||| ||||| || Sbjct 3125773 ACATTCTCAATGGTGTCACTCGGC-TCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGT 3125715 Query 64426 TTTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 3125714 CTTCACAAAGATCTGCAT 3125697 Score = 129 bits (142), Expect = 6e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || ||| || | ||||| |||||||||||| Sbjct 3125665 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCATCTTCCAGCTGCTTGCCG 3125606 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || ||||| ||||| || || || ||||| ||| Sbjct 3125605 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTG 3125546 Query 64367 ACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | || |||| |||| ||||| || | ||| | ||||||||||||||| || Sbjct 3125545 ACATTTTCAATGGTGTCACTCGGC-TCCACCTCCAGAGTGATGGTCTTGCCGGTCAAGGT 3125487 Query 64426 TTTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 3125486 CTTCACAAAGATCTGCAT 3125469 Score = 113 bits (124), Expect = 5e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | || || | ||||| |||||||||||| Sbjct 3125437 GTGGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTACGGCCATCTTCCAGCTGCTTGCCG 3125378 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| |||||| || || ||||| ||||| || || || ||||| ||| Sbjct 3125377 GCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTG 3125318 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| | ||||| || | || | ||||||||| || | ||| Sbjct 3125317 ACATTCTCAATGGTGTCACTTGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTT 3125258 Query 64427 TTTACGAAAATTTGCATTTT 64446 || || ||||| |||||||| Sbjct 3125257 TTCACAAAAATCTGCATTTT 3125238 >seq530 Length=912484 Score = 122 bits (134), Expect = 9e-23 Identities = 156/212 (74%), Gaps = 5/212 (2%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || |||||| | ||||| |||||||||||| Sbjct 248634 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 248575 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || ||||| || ||||| || || || || ||| Sbjct 248574 GCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTG 248515 Query 64367 ACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || ||| | || || | |||| ||||| || | || | ||||||||| |||| || Sbjct 248514 ACGTTCTCAATGGTGTCGCTCGGC-TCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGT 248456 Query 64426 TTTTACGAAAATTTGCATTTTAA---TAATGA 64454 || || || || |||||||||| |||||| Sbjct 248455 CTTCACAAAGATCTGCATTTTAACTGTAATGA 248424 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || |||||| | ||||| |||||||||||| Sbjct 248862 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 248803 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || ||||| || ||||| || || || || ||| Sbjct 248802 GCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTG 248743 Query 64367 ACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || ||| | || |||| |||| ||||| || | || | ||||||||| |||| || Sbjct 248742 ACGTTCTCAATGGTGTCACTCGGC-TCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGT 248684 Query 64426 TTTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 248683 CTTCACAAAGATCTGCAT 248666 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || |||||| | ||||| |||||||||||| Sbjct 249090 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 249031 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || ||||| || ||||| || || || || ||| Sbjct 249030 GCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTC 248971 Query 64367 ACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || ||| | || |||| |||| ||||| || | || | ||||||||| |||| || Sbjct 248970 ACGTTCTCAATGGTGTCACTCGGC-TCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGT 248912 Query 64426 TTTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 248911 CTTCACAAAGATCTGCAT 248894 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || |||||| | ||||| |||||||||||| Sbjct 249318 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 249259 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || ||||| || ||||| || || || || ||| Sbjct 249258 GCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTC 249199 Query 64367 ACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || ||| | || |||| |||| ||||| || | || | ||||||||| |||| || Sbjct 249198 ACGTTCTCAATGGTGTCACTCGGC-TCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGT 249140 Query 64426 TTTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 249139 CTTCACAAAGATCTGCAT 249122 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || |||||| | ||||| |||||||||||| Sbjct 249546 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 249487 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || ||||| || ||||| || || || || ||| Sbjct 249486 GCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTC 249427 Query 64367 ACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || ||| | || |||| |||| ||||| || | || | ||||||||| |||| || Sbjct 249426 ACGTTCTCAATGGTGTCACTCGGC-TCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGT 249368 Query 64426 TTTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 249367 CTTCACAAAGATCTGCAT 249350 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || |||||| | ||||| |||||||||||| Sbjct 249774 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 249715 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || ||||| || ||||| || || || || ||| Sbjct 249714 GCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTC 249655 Query 64367 ACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || ||| | || |||| |||| ||||| || | || | ||||||||| |||| || Sbjct 249654 ACGTTCTCAATGGTGTCACTCGGC-TCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGT 249596 Query 64426 TTTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 249595 CTTCACAAAGATCTGCAT 249578 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || |||||| | ||||| |||||||||||| Sbjct 250002 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 249943 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || ||||| || ||||| || || || || ||| Sbjct 249942 GCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTC 249883 Query 64367 ACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || ||| | || |||| |||| ||||| || | || | ||||||||| |||| || Sbjct 249882 ACGTTCTCAATGGTGTCACTCGGC-TCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGT 249824 Query 64426 TTTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 249823 CTTCACAAAGATCTGCAT 249806 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || |||||| | ||||| |||||||||||| Sbjct 250230 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 250171 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || ||||| || ||||| || || || || ||| Sbjct 250170 GCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTG 250111 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| | ||||| || | || | |||||||||||||| || Sbjct 250110 ACGTTCTCAATGGTGTCACTCGGTTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 250051 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 250050 TTCACAAAGATCTGCAT 250034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499558929795560