Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq102 98.7 1e-15 seq530 93.3 4e-14 seq148 91.5 1e-13 >seq102 Length=3625303 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||||| || | || | | | |||||||| || |||||||||||| Sbjct 3125467 CCACCTCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 3125408 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || || || || |||| | |||| || | ||| || || || || Sbjct 3125407 AGCGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3125348 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| |||||| || | | || | |||||| | | ||||||| Sbjct 3125347 ATGCCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCACTTGGCTCCACC 3125288 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| || ||||| |||||||||||||| Sbjct 3125287 TCCAAGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAAATCTGCAT 3125241 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || || || || || || |||| | Sbjct 3125890 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCA 3125831 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| ||||| |||||||| ||||| |||||| || | Sbjct 3125830 AAGATCAGCCTCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACA 3125771 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| ||| ||||||||| | || | || || ||||||| || || Sbjct 3125770 TTCTCAATGGTGTCACTCGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTC 3125711 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 3125710 ACAAAGATCTGCAT 3125697 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||||| || | || | | | |||||||| || ||||||||||| Sbjct 3125695 CCACCTCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 3125636 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || || || || |||| | |||| || | ||| ||||| || || Sbjct 3125635 AGGGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 3125576 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| |||||| || | | ||| | |||||| ||| ||||||| Sbjct 3125575 ATGCCTTCCTTGTCCTGGATTTTAGCCTTGACATTTTCAATGGTGTCACTCGGCTCCACC 3125516 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || |||| || || ||||| |||||||| Sbjct 3125515 TCCAGAGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 3125469 >seq530 Length=912484 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || || || || || || |||| | Sbjct 248631 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 248572 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| |||||||| || || || |||||||| ||| || || | Sbjct 248571 AAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTGACG 248512 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| ||| ||||||||| | || | || || || ||||| || || Sbjct 248511 TTCTCAATGGTGTCGCTCGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTC 248452 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 248451 ACAAAGATCTGCAT 248438 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || || || || || || |||| | Sbjct 248859 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 248800 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| |||||||| || || || |||||||| ||| || || | Sbjct 248799 AAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTGACG 248740 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| ||| ||||||||| | || | || || || ||||| || || Sbjct 248739 TTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTC 248680 Query 138601 ACAAAAATCTGCATGGCT 138618 ||||| ||||||||| || Sbjct 248679 ACAAAGATCTGCATGCCT 248662 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || || || || || || |||| | Sbjct 249087 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 249028 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| |||||||| || || || |||||||| ||| || || | Sbjct 249027 AAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTCACG 248968 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| ||| ||||||||| | || | || || || ||||| || || Sbjct 248967 TTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTC 248908 Query 138601 ACAAAAATCTGCATGGCT 138618 ||||| ||||||||| || Sbjct 248907 ACAAAGATCTGCATGCCT 248890 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || || || || || || |||| | Sbjct 249315 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 249256 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| |||||||| || || || |||||||| ||| || || | Sbjct 249255 AAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTCACG 249196 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| ||| ||||||||| | || | || || || ||||| || || Sbjct 249195 TTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTC 249136 Query 138601 ACAAAAATCTGCATGGCT 138618 ||||| ||||||||| || Sbjct 249135 ACAAAGATCTGCATGCCT 249118 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || || || || || || |||| | Sbjct 249543 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 249484 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| |||||||| || || || |||||||| ||| || || | Sbjct 249483 AAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTCACG 249424 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| ||| ||||||||| | || | || || || ||||| || || Sbjct 249423 TTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTC 249364 Query 138601 ACAAAAATCTGCATGGCT 138618 ||||| ||||||||| || Sbjct 249363 ACAAAGATCTGCATGCCT 249346 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || || || || || || |||| | Sbjct 249771 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 249712 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| |||||||| || || || |||||||| ||| || || | Sbjct 249711 AAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTCACG 249652 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| ||| ||||||||| | || | || || || ||||| || || Sbjct 249651 TTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTC 249592 Query 138601 ACAAAAATCTGCATGGCT 138618 ||||| ||||||||| || Sbjct 249591 ACAAAGATCTGCATGCCT 249574 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || || || || || || |||| | Sbjct 249999 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 249940 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| |||||||| || || || |||||||| ||| || || | Sbjct 249939 AAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTCACG 249880 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| ||| ||||||||| | || | || || || ||||| || || Sbjct 249879 TTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTC 249820 Query 138601 ACAAAAATCTGCATGGCT 138618 ||||| ||||||||| || Sbjct 249819 ACAAAGATCTGCATGCCT 249802 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 138384 GCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC 138443 |||||| || | || |||| || | || | | | |||||||| || ||||||||||| Sbjct 250264 GCAGCCTCCCCTCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 250205 Query 138444 GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGG 138503 | | || || || || || || || |||| | |||| || | ||| |||||||| Sbjct 250204 GGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGG 250145 Query 138504 AGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTC 138563 || || || |||||||| ||| || || | | || | |||||| ||| || Sbjct 250144 GGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTCGGTTC 250085 Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||||| | || | || || || ||||| || || ||||| ||||||||| || Sbjct 250084 CACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATGCCT 250030 >seq148 Length=2989754 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/114 (80%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 153626 CTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCC 153685 ||||| ||| ||| |||||| ||||||||||| ||||||||||||||| || || || Sbjct 2372620 CTCTT-GGC-TCG-TGTACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATTGTCCC 2372564 Query 153686 CAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 || || ||||| ||||| || || ||||| | ||| ||| |||||||||| || Sbjct 2372563 CAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTATGG 2372510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496177111103280