Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq530 150 2e-31 seq102 127 2e-24 >seq530 Length=912484 Score = 150 bits (166), Expect = 2e-31 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || || || || |||||||| ||||||||| | || || ||| | Sbjct 248435 AAAATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCG 248494 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||||| | | | |||| | || | || |||| ||||||||||| |||||| | || Sbjct 248495 AGCGACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGA 248553 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | || ||||| |||||||| || | ||||||||| |||||| Sbjct 248554 CCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTA 248613 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| | || || || |||| ||||| |||| || ||| Sbjct 248614 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGAGGGGAGGC 248665 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| ||||||||| | || || ||| | | Sbjct 248666 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCGAGT 248725 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| |||||| | ||||| Sbjct 248726 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACCA 248784 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 248785 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 248844 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || || |||| ||||| |||| || ||| Sbjct 248845 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGAGGGGAGGC 248893 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| ||||||||| | || || ||| | | Sbjct 248894 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCGAGT 248953 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| |||||| | ||||| Sbjct 248954 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACCA 249012 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 249013 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 249072 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || || |||| ||||| |||| || ||| Sbjct 249073 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGAGGGGAGGC 249121 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| ||||||||| | || || ||| | | Sbjct 249122 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCGAGT 249181 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| |||||| | ||||| Sbjct 249182 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACCA 249240 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 249241 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 249300 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || || |||| ||||| |||| || ||| Sbjct 249301 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGAGGGGAGGC 249349 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| ||||||||| | || || ||| | | Sbjct 249350 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCGAGT 249409 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| |||||| | ||||| Sbjct 249410 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACCA 249468 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 249469 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 249528 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || || |||| ||||| |||| || ||| Sbjct 249529 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGAGGGGAGGC 249577 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| ||||||||| | || || ||| | | Sbjct 249578 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCGAGT 249637 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| |||||| | ||||| Sbjct 249638 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACCA 249696 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 249697 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 249756 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || || |||| ||||| |||| || ||| Sbjct 249757 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGAGGGGAGGC 249805 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| ||||||||| | || || ||| | | Sbjct 249806 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCGAGT 249865 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| |||||| | ||||| Sbjct 249866 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACCA 249924 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 249925 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 249984 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || || |||| ||||| |||| || ||| Sbjct 249985 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGAGGGGAGGC 250033 Score = 132 bits (146), Expect = 5e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || || | | Sbjct 250034 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAACCGAGT 250093 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| |||||| | ||||| Sbjct 250094 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACCA 250152 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 250153 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 250212 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCCGC 38474 |||||| ||||| | || || || |||| ||||| |||| || ||| || Sbjct 250213 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGAGGGGAGGCTGC 250264 >seq102 Length=3625303 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || ||||| ||||| ||||| ||||||||| | || || ||| | Sbjct 3125238 AAAATGCAGATTTTTGTGAAAACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAGCCA 3125297 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | ||||||| ||||| || || |||||| | || Sbjct 3125298 AGTGACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGAT 3125357 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || ||||| |||||||| || | || || || ||||||| Sbjct 3125358 CAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACGCTTTCCGACTAC 3125417 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| | || || || | || |||||| ||||||| || Sbjct 3125418 AACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGAGGTGG 3125467 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| |||||||| | || || ||| | | Sbjct 3125469 ATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCGAGT 3125528 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | ||||||| ||||| || || |||||| | ||||| Sbjct 3125529 GACACCATTGAAAATGTCAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 3125588 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | || |||||| ||||||||| Sbjct 3125589 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTACAAC 3125648 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || || | || |||||| ||||||| || Sbjct 3125649 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGAGGTGG 3125695 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| ||||||||| | || || ||| | | Sbjct 3125697 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCGAGT 3125756 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||||||| ||||| || || ||||| | ||||| Sbjct 3125757 GACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGTATTCCTCCTGACCAG 3125816 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| ||||| || || | ||||||||| |||||||||| Sbjct 3125817 CAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 3125876 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || || | || ||||| |||| || || Sbjct 3125877 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGCCTGAGGGGTGG 3125923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500086839052160