Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq49 107 2e-18 seq208 105 8e-18 >seq49 Length=4988178 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| || || || | ||| |||||||||||||| || || Sbjct 468619 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGACCCGGCATCAGTCCTCTCTTCTTG 468678 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||| ||||||| ||||| | ||||| ||||| || ||||| || | ||||||||| Sbjct 468679 AGCCAAAATATAGCTGCAAAAGCACCAGAGAAGAAAATTCCTTCAACCGAGGCAAAAGCA 468738 Query 19105 ACTAGTCTTTCTCC 19118 || ||||| ||||| Sbjct 468739 ACCAGTCTCTCTCC 468752 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 19219 TCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCT 19278 |||| ||| || | ||| | ||||| |||||||||||||| |||||||| | ||||||| Sbjct 472191 TCTGGATCCTTGATATAAGTGTCTATTAATAAACTGTACATCTCTGAATGCACATTTTCT 472250 Query 19279 ATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 || | ||||| || ||||| ||||| | || |||| ||||| ||||| Sbjct 472251 ATTACTATCTGGAAGCCGTAGAAACAGCGAGCCTCTGGGATCTGCACTTC 472300 >seq208 Length=2424200 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || |||| |||||| ||||| || | |||||||| | |||| || | Sbjct 1738292 CCTCATCTCTGCTGATCAGTTCATTGGAAAAAGTAAGCCCAGGCATTAACCCTCGCTTCT 1738233 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || ||||| ||||| || || ||||||||||| ||||| || ||||| || | Sbjct 1738232 TCAGCCAAAAGATAGACGCAAAAGAACCGGAAAAGAATATTCCTTCCACAGCTGCGAAGG 1738173 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| || |||||| Sbjct 1738172 CGACTACTCGTTCTCC 1738157 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 19225 TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCC 19284 ||||| | ||||| ||| || | ||||||||||||||||||||| || ||||| || || Sbjct 1737130 TCTTTGATATATGTATCAATAAGTAAACTGTACATTTCTGAATGGATGTTTTCCATGGCG 1737071 Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| || || || ||||| | |||||||| | ||| ||||| Sbjct 1737070 ATCTGGAAACCATAGAAACAGCGAGCTTCTGTCACCTGCACTTC 1737027 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 19457 AATCT-ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATA 19515 ||||| || |||||| |||||||||| || ||||||||||| |||||||| | ||| ||| Sbjct 1732687 AATCTGACCTCTTCAGCTGTCCAAAAGGATGCCTCTGCTTTCTTATACATTTGCCAGATA 1732628 Query 19516 TCACGATATTGTATAGGAAATATAACAAA 19544 ||| | || || || ||||| || ||||| Sbjct 1732627 TCATGGTACTGAATGGGAAAGATGACAAA 1732599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562012194576360