Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq119 132 4e-25 seq237 96.9 3e-14 >seq119 Length=3366018 Score = 132 bits (146), Expect = 4e-25 Identities = 347/519 (67%), Gaps = 13/519 (3%) Strand=Plus/Minus Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084 ||||| |||| || || |||| || || ||||| |||||||||||||| |||||||| Sbjct 3318442 TGTGTGGGTGCTTTTCAGCATGGCAAGGTGGAAATCATTGCCAATGATCAGGGTAACAGG 3318383 Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144 || || ||| || ||| | || || || || || | |||| ||||| ||||| Sbjct 3318382 ACCACGCCAGGCTACGTTGCCTT-ACAGATACAGAGAGGCTCATTGGAGATGCTGCAAAT 3318324 Query 550145 TATCAAG---CCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGA 550201 | |||| ||| || || || || || | | |||||||| |||| | ||||| Sbjct 3318323 AACCAAGTGGCCA-TG--AACCCCACAAACATGGTATTTGATGCAAAACACCTGATTGGT 3318267 Query 550202 AGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTT 550261 | || ||| || || | ||| ||| | |||||||| || ||||||||| |||| Sbjct 3318266 CGCAGATTTGATTATGCTGTTGTCCAGTCTGATATGAAACACTGGCCTTTCACTGTTGTG 3318207 Query 550262 AATGTTTCTGGAAAACCTTATATTGAAGCT--ACTCATGAAGGATCTGTTAAACAATTTT 550319 |||| | ||| | || | | | || | | | | ||||| || |||| Sbjct 3318206 AATGATGATGGTAGGCCAAA-AGTCCAGGTGGAGT-ACAAAGGAGAAACGAAGAGCTTTT 3318149 Query 550320 CACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTG 550379 || || | || || ||||| || ||| |||||||| | | | || || | Sbjct 3318148 ATCCCGAGGAGATATCCTCTATAGTGCTAACCAAAATGAACAAGATAACCGAGGCGTAC- 3318090 Query 550380 TTGGTCAAGA-AGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAA 550438 |||| |||| |||||| | || | || || ||||| ||||| |||||||| ||| Sbjct 3318089 TTGGGAAAGACAGTTACTAACGCCACGGTTACAGTCCCAGCTTATTTCAATGACTCCCAA 3318030 Query 550439 CGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAAT 550498 | || | || |||||||||||| |||||||| |||||||| || | || || ||| Sbjct 3318029 CACCAGGTGACAAAAGATGCTGGAACCATTGCTGGCCTTAATGTGCTCCAAATCATTAAT 3317970 Query 550499 GAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 || || ||||| |||| |||| ||||||| || ||| Sbjct 3317969 GAGCCAACTGCCACTGCTTTTGCTTATGGACAGGACAAA 3317931 Score = 91.5 bits (100), Expect = 1e-12 Identities = 169/244 (69%), Gaps = 7/244 (3%) Strand=Plus/Minus Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084 ||||| |||| || || |||| || || ||||| |||||||||||||| |||||||| Sbjct 3320012 TGTGTGGGTGCTTTTCAGCATGGCAAGGTGGAAATCATTGCCAATGATCAGGGTAACAGG 3319953 Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144 || || ||| || ||| | || || || || || | |||| ||||| ||||| Sbjct 3319952 ACCACGCCAGGCTACGTTGCCTT-ACAGATACAGAGAGGCTCATTGGAGATGCTGCAAAT 3319894 Query 550145 TATCAA---GCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGA 550201 | ||| |||| || || || || || | | |||||||| |||| | ||||| Sbjct 3319893 AACCAAGTGGCCA-TG--AACCCCACAAACATGGTATTTGATGCAAAACACCTGATTGGT 3319837 Query 550202 AGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTT 550261 | || ||| || || | ||| ||| | |||||||| || ||||||||| |||| Sbjct 3319836 CGCAGATTTGATTATGCTGTTGTCCAGTCTGATATGAAACACTGGCCTTTCACTGTTGTG 3319777 Query 550262 AATG 550265 |||| Sbjct 3319776 AATG 3319773 >seq237 Length=2162574 Score = 96.9 bits (106), Expect = 3e-14 Identities = 178/261 (68%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 |||||||| || || | || ||||| || ||||| | ||| || || | | ||| Sbjct 625592 GCTATAGGAATTGACCTCGGTACCACCTACTCCTGTGTGGCTGTCTGCCAGCACGACAAA 625651 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || ||||||||||| ||||| ||| | || ||||| ||||| |||| || Sbjct 625652 GTAGAGATCATTGCCAATGACCAAGGAAACCGGACCACTCCCAGCTATGTGGCTTTTACC 625711 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 |||||||| | ||||| || |||| || || ||| || || || || Sbjct 625712 AGCACTGAACACCTGGTTGGGGACCCAGCTAAGAGCCAGGCCTCTCTCAACCCCCAAAAC 625771 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || ||||| || || || ||||| || || | | | ||| | ||||| |||| Sbjct 625772 ACAGTGTTCGATGCCAAGCGGTTGATTGGCAGGAGATATGAAGATGCCACTGTCCAGGAG 625831 Query 550232 GATATGAAGCATTGGCCTTTC 550252 || || ||||| ||||||||| Sbjct 625832 GACATCAAGCACTGGCCTTTC 625852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028568890872010